5IN1

Crystal Structure of the MRG701 chromodomain

  • Classification: TRANSCRIPTION
  • Organism(s): Oryza sativa
  • Expression System: Escherichia coli
  • Mutation(s): No 

  • Deposited: 2016-03-07 Released: 2017-03-01 
  • Deposition Author(s): Huang, Y., Liu, Y.
  • Funding Organization(s): Ministry of Science and Technology of China, National Natural Science Foundation of China, Strategic Priority Research Program

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.40 Å
  • R-Value Free: 0.204 
  • R-Value Work: 0.182 
  • R-Value Observed: 0.184 

wwPDB Validation   3D Report Full Report


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Literature

Structural studies on MRG701 chromodomain reveal a novel dimerization interface of MRG proteins in green plants

Liu, Y.Wu, H.Yu, Y.Huang, Y.

(2016) Protein Cell 7: 792-803

  • DOI: https://doi.org/10.1007/s13238-016-0310-5
  • Primary Citation of Related Structures:  
    5IN1

  • PubMed Abstract: 

    MRG proteins are conserved during evolution in fungi, flies, mammals and plants, and they can exhibit diversified functions. The animal MRGs were found to form various complexes to activate gene expression. Plant MRG1/2 and MRG702 were reported to be involved in the regulation of flowering time via binding to H3K36me3-marked flowering genes. Herein, we determined the crystal structure of MRG701 chromodomain (MRG701 CD ). MRG701 CD forms a novel dimerization fold both in crystal and in solution. Moreover, we found that the dimerization of MRG chromodomains is conserved in green plants. Our findings may provide new insights into the mechanism of MRGs in regulation of gene expression in green plants.


  • Organizational Affiliation

    State Key Laboratory of Molecular Biology, National Center for Protein Science Shanghai, Shanghai Science Research Center, Shanghai Key Laboratory of Molecular Andrology, Institute of Biochemistry and Cell Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, 200031, China.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
MRG701
A, B
72Oryza sativaMutation(s): 0 
UniProt
Find proteins for Q2R2X7 (Oryza sativa subsp. japonica)
Explore Q2R2X7 
Go to UniProtKB:  Q2R2X7
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ2R2X7
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.40 Å
  • R-Value Free: 0.204 
  • R-Value Work: 0.182 
  • R-Value Observed: 0.184 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 31.786α = 90
b = 59.801β = 102.58
c = 40.616γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-3000data collection
HKL-3000data scaling
PHENIXphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Ministry of Science and Technology of ChinaChina2012CB910502
National Natural Science Foundation of ChinaChina31270774
Strategic Priority Research ProgramChinaXDB08010202

Revision History  (Full details and data files)

  • Version 1.0: 2017-03-01
    Type: Initial release
  • Version 1.1: 2023-11-08
    Changes: Data collection, Database references, Refinement description