Download MendeleyCrystal structure of an oxidoreductase from Burkholderia vietnamiensis
Mayclin, S.J., Abendroth, J., Lorimer, D.D., Edwards, T.E.To be published.
5IDX
Crystal structure of an oxidoreductase from Burkholderia vietnamiensis
- PDB DOI: https://doi.org/10.2210/pdb5IDX/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Burkholderia vietnamiensis G4
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2016-02-24 Released: 2016-03-16
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.95 Å
- R-Value Free: 0.199
- R-Value Work: 0.161
- R-Value Observed: 0.162
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Short-chain dehydrogenase/reductase SDR | 267 | Burkholderia vietnamiensis G4 | Mutation(s): 0 Gene Names: Bcep1808_2377 |  | |
UniProt | |||||
Find proteins for A4JGH3 (Burkholderia vietnamiensis (strain G4 / LMG 22486)) Explore A4JGH3 Go to UniProtKB: A4JGH3 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A4JGH3 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | C [auth A] D [auth A] E [auth B] F [auth B] G [auth B] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.95 Å
- R-Value Free: 0.199
- R-Value Work: 0.161
- R-Value Observed: 0.162
- Space Group: P 43 21 2
- Diffraction Data: https://doi.org/10.18430/M35IDX
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 110.75 | α = 90 |
| b = 110.75 | β = 90 |
| c = 110.05 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| XSCALE | data scaling |
| MOLREP | phasing |
| PDB_EXTRACT | data extraction |
| Coot | model building |
| XDS | data reduction |
Entry History
Deposition Data
- Released Date: 2016-03-16 Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Revision History (Full details and data files)
- Version 1.0: 2016-03-16
Type: Initial release - Version 1.1: 2023-09-27
Changes: Data collection, Database references, Derived calculations, Refinement description
