Download MendeleyStructure of the nucleotide binding domain of an ABC transporter MsbA from Acinetobacter baumannii
Mayclin, S.J., Lorimer, D.D., Edwards, T.E.To be published.
5IDV
Structure of the nucleotide binding domain of an ABC transporter MsbA from Acinetobacter baumannii
- PDB DOI: https://doi.org/10.2210/pdb5IDV/pdb
- Classification: TRANSPORT PROTEIN
- Organism(s): Acinetobacter baumannii AB5075
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2016-02-24 Released: 2016-03-02
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.45 Å
- R-Value Free: 0.178
- R-Value Work: 0.149
- R-Value Observed: 0.150
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Lipid A export ATP-binding/permease protein MsbA | 279 | Acinetobacter baumannii AB5075 | Mutation(s): 0 Gene Names: msbA, APC40_11520 EC: 3.6.3 |  | |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| EDO Query on EDO | B [auth A], C [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.45 Å
- R-Value Free: 0.178
- R-Value Work: 0.149
- R-Value Observed: 0.150
- Space Group: C 2 2 21
- Diffraction Data: https://doi.org/10.18430/M35IDV
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 65.22 | α = 90 |
| b = 89.03 | β = 90 |
| c = 104.14 | γ = 90 |
| Software Name | Purpose |
|---|---|
| XSCALE | data scaling |
| MOLREP | phasing |
| PDB_EXTRACT | data extraction |
| Coot | model building |
| PHENIX | refinement |
| XDS | data reduction |
Entry History
Deposition Data
- Released Date: 2016-03-02 Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Revision History (Full details and data files)
- Version 1.0: 2016-03-02
Type: Initial release - Version 1.1: 2023-09-27
Changes: Data collection, Database references, Derived calculations, Refinement description
