Crystal structure of a peptide deformylase from Burkholderia ambifaria
Seattle Structural Genomics Center for Infectious Disease (SSGCID), Abendroth, J., Mayclin, S.J., Lorimer, D.D., Edwards, T.E.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Peptide deformylase | 185 | Burkholderia ambifaria MC40-6 | Mutation(s): 0  Gene Names: def, BamMC406_1925 EC: 3.5.1.88 | ||
UniProt | |||||
Find proteins for B1YSH1 (Burkholderia ambifaria (strain MC40-6)) Explore B1YSH1  Go to UniProtKB:  B1YSH1 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | B1YSH1 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
SO4 Query on SO4 | D [auth A] E [auth A] F [auth A] G [auth A] L [auth B] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L | |||
EDO Query on EDO | H [auth A], I [auth A], J [auth A], P [auth B] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N | |||
FE Query on FE | C [auth A], K [auth B] | FE (III) ION Fe VTLYFUHAOXGGBS-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 116.69 | α = 90 |
b = 121.35 | β = 90 |
c = 71.29 | γ = 90 |
Software Name | Purpose |
---|---|
XDS | data reduction |
XSCALE | data scaling |
PHENIX | refinement |
PHASER | phasing |
PDB_EXTRACT | data extraction |
Coot | model building |