5H4U

Crystal structure of cellulase from Antarctic springtail, Cryptopygus antarcticus


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.60 Å
  • R-Value Free: 0.289 
  • R-Value Work: 0.219 
  • R-Value Observed: 0.226 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Genetic and Structural Characterization of a Thermo-Tolerant, Cold-Active, and Acidic Endo-beta-1,4-glucanase from Antarctic Springtail, Cryptopygus antarcticus.

Song, J.M.Hong, S.K.An, Y.J.Kang, M.H.Hong, K.H.Lee, Y.H.Cha, S.S.

(2017) J Agric Food Chem 65: 1630-1640

  • DOI: https://doi.org/10.1021/acs.jafc.6b05037
  • Primary Citation of Related Structures:  
    5H4U

  • PubMed Abstract: 

    The CaCel gene from Antarctic springtail Cryptopygus antarcticus codes for a cellulase belonging to the glycosyl hydrolase family 45 (GHF45). Phylogenetic, biochemical, and structural analyses revealed that the CaCel gene product (CaCel) is closely related to fungal GHF45 endo-β-1,4-glucanases. The organization of five introns within the open reading frame of the CaCel gene indicates its endogenous origin in the genome of the species, which suggests the horizontal transfer of the gene from fungi to the springtail. CaCel exhibited optimal activity at pH 3.5, retained 80% of its activity at 0-10 °C, and maintained a half-life of 4 h at 70 °C. Based on the structural comparison between CaCel and a fungal homologue, we deduced the structural basis for the unusual characteristics of CaCel. Under acidic conditions at 50 °C, CaCel was effective to digest the green algae (Ulva pertusa), suggesting that it could be exploited for biofuel production from seaweeds.


  • Organizational Affiliation

    Korea Institute of Ocean Science and Technology , 787 Haean-Ro, Sangnok-Gu, Ansan 426-744, Republic of Korea.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Endo-beta-1,4-glucanase
A, B, C
231Cryptopygus antarcticusMutation(s): 0 
UniProt
Find proteins for D3GDK4 (Cryptopygus antarcticus)
Explore D3GDK4 
Go to UniProtKB:  D3GDK4
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupD3GDK4
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.60 Å
  • R-Value Free: 0.289 
  • R-Value Work: 0.219 
  • R-Value Observed: 0.226 
  • Space Group: P 31
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 81.714α = 90
b = 81.714β = 90
c = 89.352γ = 120
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-2000data scaling
HKL-2000data processing

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2017-03-22
    Type: Initial release
  • Version 1.1: 2020-02-26
    Changes: Data collection
  • Version 1.2: 2023-11-08
    Changes: Data collection, Database references, Refinement description