5GZR

Zika virus E protein complexed with a neutralizing antibody Z23-Fab


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 9.40 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Molecular determinants of human neutralizing antibodies isolated from a patient infected with Zika virus

Wang, Q.Yang, H.Liu, X.Dai, L.Ma, T.Qi, J.Wong, G.Peng, R.Liu, S.Li, J.Li, S.Song, J.Liu, J.He, J.Yuan, H.Xiong, Y.Liao, Y.Li, J.Yang, J.Tong, Z.Griffin, B.D.Bi, Y.Liang, M.Xu, X.Qin, C.Cheng, G.Zhang, X.Wang, P.Qiu, X.Kobinger, G.Shi, Y.Yan, J.Gao, G.F.

(2016) Sci Transl Med 8: 369ra179-369ra179

  • DOI: https://doi.org/10.1126/scitranslmed.aai8336
  • Primary Citation of Related Structures:  
    5GZN, 5GZO, 5GZR

  • PubMed Abstract: 

    The 2015-2016 outbreak of Zika virus (ZIKV) disease has affected many countries and is a major public health concern. ZIKV is associated with fetal microcephaly and neurological complications, and countermeasures are needed to treat and prevent ZIKV infection. We report the isolation of 13 specific human monoclonal antibodies from a single patient infected with ZIKV. Two of the isolated antibodies (Z23 and Z3L1) demonstrated potent ZIKV-specific neutralization in vitro without binding or neutralizing activity against strains 1 to 4 of dengue virus, the closest relative to ZIKV. These two antibodies provided postexposure protection to mice in vivo. Structural studies revealed that Z23 and Z3L1 bound to tertiary epitopes in envelope protein domain I, II, or III, indicating potential targets for ZIKV-specific therapy. Our results suggest the potential of antibody-based therapeutics and provide a structure-based rationale for the design of future ZIKV-specific vaccines.


  • Organizational Affiliation

    CAS Key Laboratory of Microbial Physiological and Metabolic Engineering, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
structural protein E
A, B, C
504Zika virusMutation(s): 0 
UniProt
Find proteins for A0A1B0XTC8 (Zika virus)
Explore A0A1B0XTC8 
Go to UniProtKB:  A0A1B0XTC8
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A1B0XTC8
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
strutural protein M
D, E, F
75Zika virusMutation(s): 0 
UniProt
Find proteins for A0A1B0XTC8 (Zika virus)
Explore A0A1B0XTC8 
Go to UniProtKB:  A0A1B0XTC8
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A1B0XTC8
Sequence Annotations
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Z23 Fab heavy chainG [auth H],
I [auth M]
221Homo sapiensMutation(s): 0 
Entity Groups  
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Sequence Annotations
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  • Reference Sequence
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Z23 Fab light chainH [auth L],
J [auth N]
214Homo sapiensMutation(s): 0 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 9.40 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION1.4

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
China Ministry of Science and Technology Key Research and Development ProgramChina2016YFC1200300

Revision History  (Full details and data files)

  • Version 1.0: 2016-11-30
    Type: Initial release
  • Version 1.1: 2016-12-28
    Changes: Database references
  • Version 1.2: 2024-03-27
    Changes: Data collection, Database references, Derived calculations