5GOX

Eukaryotic Rad50 Functions as A Rod-shaped Dimer


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.40 Å
  • R-Value Free: 0.271 
  • R-Value Work: 0.213 
  • R-Value Observed: 0.216 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Eukaryotic Rad50 functions as a rod-shaped dimer

Park, Y.B.Hohl, M.Padjasek, M.Jeong, E.Jin, K.S.Krezel, A.Petrini, J.H.J.Cho, Y.

(2017) Nat Struct Mol Biol 24: 248-257

  • DOI: https://doi.org/10.1038/nsmb.3369
  • Primary Citation of Related Structures:  
    5GOX

  • PubMed Abstract: 

    The Rad50 hook interface is crucial for assembly and various functions of the Mre11 complex. Previous analyses suggested that Rad50 molecules interact within (intracomplex) or between (intercomplex) dimeric complexes. In this study, we determined the structure of the human Rad50 hook and coiled-coil domains. The data suggest that the predominant structure is the intracomplex, in which the two parallel coiled coils proximal to the hook form a rod shape, and that a novel interface within the coiled-coil domains of Rad50 stabilizes the interaction of Rad50 protomers in the dimeric assembly. In yeast, removal of the coiled-coil interface compromised Tel1 activation without affecting DNA repair, while simultaneous disruption of that interface and the hook phenocopied a null mutation. The results demonstrate that the hook and coiled-coil interfaces coordinately promote intracomplex assembly and define the intracomplex as the functional form of the Mre11 complex.


  • Organizational Affiliation

    Department of Life Sciences, Pohang University of Science and Technology, Pohang, South Korea.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
DNA repair protein RAD50
A, B
186Homo sapiensMutation(s): 0 
Gene Names: RAD50
EC: 3.6
UniProt & NIH Common Fund Data Resources
Find proteins for Q92878 (Homo sapiens)
Explore Q92878 
Go to UniProtKB:  Q92878
PHAROS:  Q92878
GTEx:  ENSG00000113522 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ92878
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.40 Å
  • R-Value Free: 0.271 
  • R-Value Work: 0.213 
  • R-Value Observed: 0.216 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 42.18α = 90
b = 61.972β = 99.75
c = 81.54γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-2000data collection
HKL-2000data scaling
PHENIXphasing

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2017-02-01
    Type: Initial release
  • Version 1.1: 2017-03-15
    Changes: Database references