5FOH
Crystal structure of the catalytic domain of NcLPMO9A
- PDB DOI: https://doi.org/10.2210/pdb5FOH/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Neurospora crassa OR74A
- Expression System: Komagataella pastoris
- Mutation(s): No
- Deposited: 2015-11-18 Released: 2016-12-07
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.60 Å
- R-Value Free: 0.178
- R-Value Work: 0.154
- R-Value Observed: 0.155
This is version 1.3 of the entry. See complete history.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| POLYSACCHARIDE MONOOXYGENASE | 223 | Neurospora crassa OR74A | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for Q7S439 (Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)) Explore Q7S439 Go to UniProtKB: Q7S439 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q7S439 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| MAN Query on MAN | B [auth A], C [auth A] | alpha-D-mannopyranose C6 H12 O6 WQZGKKKJIJFFOK-PQMKYFCFSA-N |  | ||
| SO4 Query on SO4 | E [auth A], F [auth A], G [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| CU Query on CU | D [auth A] | COPPER (II) ION Cu JPVYNHNXODAKFH-UHFFFAOYSA-N |  | ||
| LI Query on LI | H [auth A] | LITHIUM ION Li HBBGRARXTFLTSG-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.60 Å
- R-Value Free: 0.178
- R-Value Work: 0.154
- R-Value Observed: 0.155
- Space Group: P 32 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 80.419 | α = 90 |
| b = 80.419 | β = 90 |
| c = 57.864 | γ = 120 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| XDS | data reduction |
| Aimless | data scaling |
| PHASER | phasing |
Entry History
Deposition Data
- Released Date: 2016-12-07 Deposition Author(s): Westereng, B., Kracun, S.K., Dimarogona, M., Mathiesen, G., Willats, W.G.T., Sandgren, M., Aachmann, F.L., Eijsink, V.G.H.
Revision History (Full details and data files)
- Version 1.0: 2016-12-07
Type: Initial release - Version 1.1: 2019-09-04
Changes: Data collection, Database references, Derived calculations - Version 1.2: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Data collection, Derived calculations, Other, Structure summary - Version 1.3: 2024-01-10
Changes: Data collection, Database references, Refinement description, Structure summary
