5EWU

Crystal structure of the Arabidopsis thaliana C-terminal Chlh at 1.25A

PDB DOI: https://doi.org/10.2210/pdb5EWU/pdb

Classification: LIGASE
Organism(s): Arabidopsis thaliana
Expression System: Escherichia coli BL21
Mutation(s): No

Deposited: 2015-11-21 Released: 2016-12-07
Deposition Author(s): Chen, Z., Zhang, X., Liu, Y., Jiang, L.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.25 Å
R-Value Free: 0.184
R-Value Work: 0.169
R-Value Observed: 0.170

wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history.

Literature

Crystal structure of the Arabidopsis thaliana C-terminal Chlh at 1.25A

Chen, Z., Zhang, X., Liu, Y., Jiang, L.

To be published.

Macromolecule Content

Total Structure Weight: 87.9 kDa
Atom Count: 7,148
Modelled Residue Count: 760
Deposited Residue Count: 776
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Magnesium-chelatase subunit ChlH, chloroplastic	A, B	388	Arabidopsis thaliana	Mutation(s): 0 Gene Names: CHLH, ABAR, CCH, GUN5, RTL1, At5g13630, MSH12.9 EC: 6.6.1.1
UniProt
Find proteins for Q9FNB0 (Arabidopsis thaliana) Explore Q9FNB0 Go to UniProtKB: Q9FNB0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q9FNB0
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
BEZ Query on BEZ Download Ideal Coordinates CCD File SDF format, chain C [auth A] SDF format, chain F [auth B] MOL2 format, chain C [auth A] MOL2 format, chain F [auth B]	C [auth A], F [auth B]	BENZOIC ACID C₇ H₆ O₂ WPYMKLBDIGXBTP-UHFFFAOYSA-N		Interactions Focus chain C [auth A] Focus chain F [auth B] Interactions & Density Focus chain C [auth A] Focus chain F [auth B]
MG Query on MG Download Ideal Coordinates CCD File SDF format, chain D [auth A] SDF format, chain E [auth A] SDF format, chain G [auth B] SDF format, chain H [auth B] SDF format, chain I [auth B] MOL2 format, chain D [auth A] MOL2 format, chain E [auth A] MOL2 format, chain G [auth B] MOL2 format, chain H [auth B] MOL2 format, chain I [auth B]	D [auth A], E [auth A], G [auth B], H [auth B], I [auth B]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N		Interactions Focus chain D [auth A] Focus chain E [auth A] Focus chain G [auth B] Focus chain H [auth B] Focus chain I [auth B] Interactions & Density Focus chain D [auth A] Focus chain E [auth A] Focus chain G [auth B] Focus chain H [auth B] Focus chain I [auth B]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.25 Å
R-Value Free: 0.184
R-Value Work: 0.169
R-Value Observed: 0.170
Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 69.099	α = 90
b = 72.776	β = 109.76
c = 72.911	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling
SHARP	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2016-12-07

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2016-12-07
Type: Initial release
Version 1.1: 2020-02-19
Changes: Data collection
Version 1.2: 2024-03-20
Changes: Data collection, Database references, Derived calculations

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5EWU

Crystal structure of the Arabidopsis thaliana C-terminal Chlh at 1.25A

Crystal structure of the Arabidopsis thaliana C-terminal Chlh at 1.25A

Entity ID: 1

UniProt

Entity Groups

Sequence Annotations

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Experimental Data

Structure Validation

Deposition Data

Revision History (Full details and data files)