Download MendeleyStructure of the Kunitz-type cysteine protease inhibitor PCPI-3 from potato
Brynda, J., Mishra, M., Mares, M.To be published.
5DVH
Structure of the Kunitz-type cysteine protease inhibitor PCPI-3 from potato
- PDB DOI: https://doi.org/10.2210/pdb5DVH/pdb
- Classification: protease inhibitor
- Organism(s): Solanum tuberosum
- Mutation(s): No
- Deposited: 2015-09-21 Released: 2016-10-12
- Funding Organization(s): Czech Science Foundation, Ministry of Education, Youth and Sports of the Czech Republic, Czech Academy of Sciences
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.223
- R-Value Work: 0.197
- R-Value Observed: 0.199
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| PCPI-3 | 193 | Solanum tuberosum | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for A0A1I9GEQ4 (Solanum tuberosum) Explore A0A1I9GEQ4 Go to UniProtKB: A0A1I9GEQ4 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A1I9GEQ4 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| CL Query on CL | B [auth A], C [auth A], D [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.223
- R-Value Work: 0.197
- R-Value Observed: 0.199
- Space Group: P 41 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 76.637 | α = 90 |
| b = 76.637 | β = 90 |
| c = 107.306 | γ = 90 |
| Software Name | Purpose |
|---|---|
| XSCALE | data scaling |
| MOLREP | phasing |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
Entry History & Funding Information
Deposition Data
- Released Date: 2016-10-12 Deposition Author(s): Brynda, J., Mishra, M., Mares, M.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Czech Science Foundation | Czech Republic | 15-18929S |
| Ministry of Education, Youth and Sports of the Czech Republic | Czech Republic | InterBioMed LO1302 |
| Czech Academy of Sciences | Czech Republic | RVO61388963 |
Revision History (Full details and data files)
- Version 1.0: 2016-10-12
Type: Initial release - Version 1.1: 2017-09-06
Changes: Author supporting evidence
