Download MendeleyX-ray Crystal Structure of a Pyridoxine 5-prime-phosphate synthase from Pseudomonas aeruginosa
Fairman, J.W., Abendroth, J., Lorimer, D., Edwards, T.E.To be published.
5DLC
X-ray Crystal Structure of a Pyridoxine 5-prime-phosphate synthase from Pseudomonas aeruginosa
- PDB DOI: https://doi.org/10.2210/pdb5DLC/pdb
- Classification: TRANSFERASE
- Organism(s): Pseudomonas aeruginosa
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2015-09-04 Released: 2015-09-16
- Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.65 Å
- R-Value Free: 0.212
- R-Value Work: 0.173
- R-Value Observed: 0.175
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Pyridoxine 5'-phosphate synthase | 256 | Pseudomonas aeruginosa | Mutation(s): 0 Gene Names: pdxJ EC: 2.6.99.2 |  | |
UniProt | |||||
Find proteins for Q02HS5 (Pseudomonas aeruginosa (strain UCBPP-PA14)) Explore Q02HS5 Go to UniProtKB: Q02HS5 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q02HS5 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PO4 Query on PO4 | E [auth A] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.65 Å
- R-Value Free: 0.212
- R-Value Work: 0.173
- R-Value Observed: 0.175
- Space Group: P 32 2 1
- Diffraction Data: https://doi.org/10.18430/M35DLC
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 150.46 | α = 90 |
| b = 150.46 | β = 90 |
| c = 86.57 | γ = 120 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| XDS | data reduction |
| XSCALE | data scaling |
| BALBES | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2015-09-16 Deposition Author(s): Fairman, J.W., Abendroth, J., Lorimer, D., Edwards, T.E., Seattle Structural Genomics Center for Infectious Disease (SSGCID)
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) | United States | -- |
Revision History (Full details and data files)
- Version 1.0: 2015-09-16
Type: Initial release - Version 1.1: 2017-09-27
Changes: Author supporting evidence, Derived calculations - Version 1.2: 2019-12-11
Changes: Author supporting evidence - Version 1.3: 2023-09-27
Changes: Data collection, Database references, Refinement description
