Download MendeleyCrystal Structure of Mouse Protocadherin-24 EC1-3
Johnson, Z.R., Sotomayor, M.To be published.
5CYX
Crystal Structure of Mouse Protocadherin-24 EC1-3
- PDB DOI: https://doi.org/10.2210/pdb5CYX/pdb
- Classification: CELL ADHESION
- Organism(s): Mus musculus
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2015-07-31 Released: 2016-11-02
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.247
- R-Value Work: 0.210
- R-Value Observed: 0.211
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Protein Cdhr2 | 337 | Mus musculus | Mutation(s): 0 Gene Names: Cdhr2 |  | |
UniProt | |||||
Find proteins for E9Q7P9 (Mus musculus) Explore E9Q7P9 Go to UniProtKB: E9Q7P9 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | E9Q7P9 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| CA Query on CA | B [auth A], C [auth A], D [auth A], E [auth A], F [auth A] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | ||
| CL Query on CL | G [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.247
- R-Value Work: 0.210
- R-Value Observed: 0.211
- Space Group: P 3 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 74.767 | α = 90 |
| b = 74.767 | β = 90 |
| c = 140.62 | γ = 120 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| PHASER | phasing |
Entry History
Deposition Data
- Released Date: 2016-11-02 Deposition Author(s): Johnson, Z.R., Sotomayor, M.
Revision History (Full details and data files)
- Version 1.0: 2016-11-02
Type: Initial release - Version 1.1: 2023-09-27
Changes: Data collection, Database references, Derived calculations, Refinement description
