5CSX
CRYSTAL STRUCTURE OF B-RAF IN COMPLEX WITH BI 882370
- PDB DOI: https://doi.org/10.2210/pdb5CSX/pdb
- Classification: TRANSFERASE
- Organism(s): Homo sapiens
- Expression System: Escherichia coli
- Mutation(s): Yes 
- Deposited: 2015-07-23 Released: 2016-03-09 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.51 Å
- R-Value Free: 0.282 
- R-Value Work: 0.217 
- R-Value Observed: 0.223 
This is version 1.4 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Serine/threonine-protein kinase B-raf | 282 | Homo sapiens | Mutation(s): 15  Gene Names: BRAF, BRAF1, RAFB1 EC: 2.7.11.1 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P15056 (Homo sapiens) Explore P15056  Go to UniProtKB:  P15056 | |||||
PHAROS:  P15056 GTEx:  ENSG00000157764  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P15056 | ||||
Sequence AnnotationsExpand | |||||
|
Small Molecules
Ligands 2 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
54J Query on 54J | B [auth A] | N-(3-{5-[(1-ethylpiperidin-4-yl)(methyl)amino]-3-(pyrimidin-5-yl)-1H-pyrrolo[3,2-b]pyridin-1-yl}-2,4-difluorophenyl)propane-1-sulfonamide C28 H33 F2 N7 O2 S AEJACXAFHXBVHF-UHFFFAOYSA-N | |||
GLC Query on GLC | C [auth A] | alpha-D-glucopyranose C6 H12 O6 WQZGKKKJIJFFOK-DVKNGEFBSA-N |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.51 Å
- R-Value Free: 0.282 
- R-Value Work: 0.217 
- R-Value Observed: 0.223 
- Space Group: C 2 2 21
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 49.375 | α = 90 |
b = 116.136 | β = 90 |
c = 102.423 | γ = 90 |
Software Name | Purpose |
---|---|
REFMAC | refinement |
PDB_EXTRACT | data extraction |
XDS | data reduction |
XSCALE | data scaling |
PHASER | phasing |
Entry History 
Deposition Data
- Released Date: 2016-03-09  Deposition Author(s): Bader, G., Stadtmuller, H., Steurer, S.
Revision History (Full details and data files)
- Version 1.0: 2016-03-09
Type: Initial release - Version 1.1: 2016-03-16
Changes: Database references - Version 1.2: 2018-04-25
Changes: Advisory, Data collection - Version 1.3: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Data collection, Derived calculations, Structure summary - Version 1.4: 2024-01-10
Changes: Advisory, Data collection, Database references, Refinement description, Structure summary