5CH6

Crystal Structure of FRIGIDA Flowering-time Regulator

PDB DOI: https://doi.org/10.2210/pdb5CH6/pdb

Classification: TRANSCRIPTION
Organism(s): Vitis vinifera
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2015-07-10 Released: 2016-05-25
Deposition Author(s): Hyun, K., Song, J.J.
Funding Organization(s): Nation Research Foundation

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.26 Å
R-Value Free: 0.239
R-Value Work: 0.225
R-Value Observed: 0.225

wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history.

Literature

Structural Analysis of FRIGIDA Flowering-Time Regulator

Hyun, K., Oh, J.E., Park, J., Noh, Y.S., Song, J.J.

(2016) Mol Plant 9: 618-620

PubMed: 26633860 Search on PubMed
DOI: https://doi.org/10.1016/j.molp.2015.11.009
Primary Citation of Related Structures:
5CH6

Organizational Affiliation

Department of Biological Sciences, KAIST Institute of the BioCentury, KAIST, Daejeon 34141, Korea.

Macromolecule Content

Total Structure Weight: 98.56 kDa
Atom Count: 6,819
Modelled Residue Count: 855
Deposited Residue Count: 867
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
FRIGIDA	A, B, C	289	Vitis vinifera	Mutation(s): 0
UniProt
Find proteins for A0A182DWB3 (Vitis vinifera) Explore A0A182DWB3 Go to UniProtKB: A0A182DWB3
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A182DWB3
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 3.26 Å
R-Value Free: 0.239
R-Value Work: 0.225
R-Value Observed: 0.225
Space Group: P 4₃ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 148.884	α = 90
b = 148.884	β = 90
c = 262.326	γ = 90

Software Package:

Software Name	Purpose
CNS	refinement
PHENIX	phasing
Coot	model building
HKL-2000	data scaling

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2016-05-25

Deposition Author(s):

Funding Organization	Location	Grant Number
Nation Research Foundation	Korea, Republic Of	--

Revision History (Full details and data files)

Version 1.0: 2016-05-25
Type: Initial release
Version 1.1: 2020-02-19
Changes: Data collection, Derived calculations
Version 1.2: 2024-03-20
Changes: Data collection, Database references

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.