Download MendeleyCrystal structures of NADP-dependent dehydrogenase from Rhodobacter sphaeroides
Kowiel, M., Gasiorowska, O.A., Shabalin, I.G., Handing, K.B., Porebski, P.J., Bonanno, J., Almo, S.C., Minor, W.To be published.
5C5I
Crystal structure of NADP-dependent dehydrogenase from Rhodobacter sphaeroides
- PDB DOI: https://doi.org/10.2210/pdb5C5I/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Cereibacter sphaeroides 2.4.1
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2015-06-19 Released: 2015-07-01
- Funding Organization(s): National Institutes of Health
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.252
- R-Value Work: 0.195
- R-Value Observed: 0.197
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| NADP-dependent dehydrogenase | 316 | Cereibacter sphaeroides 2.4.1 | Mutation(s): 0 Gene Names: RSP_3442 EC: 1.1.1.79 (PDB Primary Data), 1.1.1.81 (PDB Primary Data) |  | |
UniProt | |||||
Find proteins for Q3IWN8 (Cereibacter sphaeroides (strain ATCC 17023 / DSM 158 / JCM 6121 / CCUG 31486 / LMG 2827 / NBRC 12203 / NCIMB 8253 / ATH 2.4.1.)) Explore Q3IWN8 Go to UniProtKB: Q3IWN8 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q3IWN8 | ||||
Sequence AnnotationsExpand | |||||
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Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.252
- R-Value Work: 0.195
- R-Value Observed: 0.197
- Space Group: C 1 2 1
- Diffraction Data: https://doi.org/10.18430/M3KS38
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 110.048 | α = 90 |
| b = 80.085 | β = 93.69 |
| c = 61.33 | γ = 90 |
| Software Name | Purpose |
|---|---|
| BLU-MAX | data collection |
| HKL-3000 | data reduction |
| HKL-3000 | phasing |
| HKL-3000 | data scaling |
| MOLREP | phasing |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
Entry History & Funding Information
Deposition Data
- Released Date: 2015-07-01 Deposition Author(s): Kowiel, M., Gasiorowska, O.A., Shabalin, I.G., Handing, K.B., Porebski, P.J., Cymborowski, M., Al Obaidi, N.F., Bonanno, J., Almo, S.C., Minor, W., New York Structural Genomics Research Consortium (NYSGRC)
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health | United States | -- |
Revision History (Full details and data files)
- Version 1.0: 2015-07-01
Type: Initial release - Version 1.1: 2017-11-22
Changes: Database references, Derived calculations, Refinement description, Source and taxonomy - Version 1.2: 2022-04-13
Changes: Database references, Structure summary - Version 1.3: 2023-09-27
Changes: Data collection, Refinement description
