5B5I

The crystal structure of a crustacean hyperglycemic hormone precursor from the kuruma prawn

  • Classification: HORMONE
  • Organism(s): Penaeus japonicus
  • Expression System: Escherichia coli
  • Mutation(s): No 

  • Deposited: 2016-05-10 Released: 2016-10-19 
  • Deposition Author(s): Tsutsui, N., Nagata, K.
  • Funding Organization(s): Ministry of Education, Culture, Sport, Science and Technology of Japan, Suntory Institute for Bioorganic Research

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.60 Å
  • R-Value Free: 0.206 
  • R-Value Work: 0.189 
  • R-Value Observed: 0.190 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Crystal structure of a crustacean hyperglycemic hormone (CHH) precursor suggests structural variety in the C-terminal regions of CHH superfamily members.

Tsutsui, N.Sakamoto, T.Arisaka, F.Tanokura, M.Nagasawa, H.Nagata, K.

(2016) FEBS J 283: 4325-4339

  • DOI: https://doi.org/10.1111/febs.13926
  • Primary Citation of Related Structures:  
    5B5I

  • PubMed Abstract: 

    The crustacean hyperglycemic hormone (CHH) is one of the major hormones in crustaceans, and peptides belonging to the CHH superfamily have been found in diverse ecdysozoans. Although the basic function of CHH is to control energy metabolism, it also plays various roles in crustacean species, such as in molting and vitellogenesis. Here, we present the crystal structure of Pej-SGP-I-Gly, a partially active precursor of CHH from the kuruma prawn Marsupenaeus japonicus, which has an additional Gly residue in place of the C-terminal amide group of the mature Pej-SGP-I. The 1.6-angstrom crystal structure showed not only the common CHH superfamily scaffold comprising three α-helices, three disulfide bridges, and a hydrophobic core but also revealed that the C-terminal part has a variant backbone fold that is specific to Pej-SGP-I-Gly. The α-helix 4 of Pej-SGP-I-Gly was much longer than that of molt-inhibiting hormone (Pej-MIH) from the same species, and as a result, the following C-terminal helix, corresponding to α-helix 5 in MIH, was not formed. Unlike monomeric Pej-MIH, Pej-SGP-I-Gly forms a homodimer in the crystal structure via its unique α-helix 4. The unexpected dissimilar folds between Pej-SGP-I-Gly and Pej-MIH appear to be the result of their distinct C-terminal amino acid sequences. Variations in amino acid sequences and lengths and the resulting variety of backbone folds allow the C-terminal and sterically adjoining regions to confer different hormonal activities in diverse CHH superfamily members.


  • Organizational Affiliation

    Ushimado Marine Institute, Faculty of Science, Okayama University, Setouchi, Japan.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Crustacean hyperglycemic hormones 1
A, B
74Penaeus japonicusMutation(s): 0 
UniProt
Find proteins for O15980 (Penaeus japonicus)
Explore O15980 
Go to UniProtKB:  O15980
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO15980
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
EOH
Query on EOH

Download Ideal Coordinates CCD File 
C [auth A]ETHANOL
C2 H6 O
LFQSCWFLJHTTHZ-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.60 Å
  • R-Value Free: 0.206 
  • R-Value Work: 0.189 
  • R-Value Observed: 0.190 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 38.679α = 90
b = 55.793β = 90
c = 55.793γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
SCALEPACKdata reduction
HKL-2000data scaling
MOLREPphasing

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Ministry of Education, Culture, Sport, Science and Technology of JapanJapan25850143
Ministry of Education, Culture, Sport, Science and Technology of JapanJapan15K07576
Suntory Institute for Bioorganic ResearchJapan--

Revision History  (Full details and data files)

  • Version 1.0: 2016-10-19
    Type: Initial release
  • Version 1.1: 2016-10-26
    Changes: Database references
  • Version 1.2: 2016-12-21
    Changes: Database references
  • Version 1.3: 2020-02-26
    Changes: Data collection