5B16

X-ray structure of DROSHA in complex with the C-terminal tail of DGCR8.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.20 Å
  • R-Value Free: 0.300 
  • R-Value Work: 0.267 

wwPDB Validation   3D Report Full Report


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Literature

Structure of Human DROSHA

Kwon, S.C.Nguyen, T.A.Choi, Y.G.Jo, M.H.Hohng, S.Kim, V.N.Woo, J.S.

(2016) Cell 164: 81-90

  • DOI: https://doi.org/10.1016/j.cell.2015.12.019
  • Primary Citation of Related Structures:  
    5B16

  • PubMed Abstract: 

    MicroRNA maturation is initiated by RNase III DROSHA that cleaves the stem loop of primary microRNA. DROSHA functions together with its cofactor DGCR8 in a heterotrimeric complex known as Microprocessor. Here, we report the X-ray structure of DROSHA in complex with the C-terminal helix of DGCR8. We find that DROSHA contains two DGCR8-binding sites, one on each RNase III domain (RIIID), which mediate the assembly of Microprocessor. The overall structure of DROSHA is surprisingly similar to that of Dicer despite no sequence homology apart from the C-terminal part, suggesting that DROSHA may have evolved from a Dicer homolog. DROSHA exhibits unique features, including non-canonical zinc-finger motifs, a long insertion in the first RIIID, and the kinked link between Connector helix and RIIID, which explains the 11-bp-measuring "ruler" activity of DROSHA. Our study implicates the evolutionary origin of DROSHA and elucidates the molecular basis of Microprocessor assembly and primary microRNA processing.


  • Organizational Affiliation

    Center for RNA Research, Institute for Basic Science, Seoul 08826, Korea; School of Biological Sciences, Seoul National University, Seoul 08826, Korea.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Ribonuclease 3,DROSHA,Ribonuclease 3,DROSHA,Ribonuclease 3986Homo sapiensMutation(s): 2 
Gene Names: DROSHARN3RNASE3LRNASEN
EC: 3.1.26.3
UniProt & NIH Common Fund Data Resources
Find proteins for Q9NRR4 (Homo sapiens)
Explore Q9NRR4 
Go to UniProtKB:  Q9NRR4
PHAROS:  Q9NRR4
GTEx:  ENSG00000113360 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9NRR4
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Microprocessor complex subunit DGCR8
B, C
39Homo sapiensMutation(s): 0 
Gene Names: DGCR8C22orf12DGCRK6LP4941
UniProt & NIH Common Fund Data Resources
Find proteins for Q8WYQ5 (Homo sapiens)
Explore Q8WYQ5 
Go to UniProtKB:  Q8WYQ5
PHAROS:  Q8WYQ5
GTEx:  ENSG00000128191 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8WYQ5
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.20 Å
  • R-Value Free: 0.300 
  • R-Value Work: 0.267 
  • Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 117.254α = 90
b = 118.136β = 102.07
c = 122.296γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
SCALEPACKdata scaling
PDB_EXTRACTdata extraction
HKL-2000data reduction
PHENIXphasing

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Institute for Basic ScienceKorea, Republic OfIBS-R008-D1

Revision History  (Full details and data files)

  • Version 1.0: 2016-02-03
    Type: Initial release