5AH1

Structure of EstA from Clostridium botulinum


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.20 Å
  • R-Value Free: 0.149 
  • R-Value Work: 0.129 
  • R-Value Observed: 0.130 

wwPDB Validation   3D Report Full Report


This is version 2.1 of the entry. See complete history


Literature

Hydrolysis of Synthetic Polyesters by Clostridium Botulinum Esterases.

Perz, V.Baumschlager, A.Bleymaier, K.Zitzenbacher, S.Hromic, A.Steinkellner, G.Pairitsch, A.Lyskowski, A.Gruber, K.Sinkel, C.Kueper, U.Ribitsch, D.Guebitz, G.M.

(2016) Biotechnol Bioeng 113: 1024

  • DOI: https://doi.org/10.1002/bit.25874
  • Primary Citation of Related Structures:  
    5AH1

  • PubMed Abstract: 

    Two novel esterases from the anaerobe Clostridium botulinum ATCC 3502 (Cbotu_EstA and Cbotu_EstB) were expressed in Escherichia coli BL21-Gold(DE3) and were found to hydrolyze the polyester poly(butylene adipate-co-butylene terephthalate) (PBAT). The active site residues (triad Ser, Asp, His) are present in both enzymes at the same location only with some amino acid variations near the active site at the surrounding of aspartate. Yet, Cbotu_EstA showed higher kcat values on para-nitrophenyl butyrate and para-nitrophenyl acetate and was considerably more active (sixfold) on PBAT. The entrance to the active site of the modeled Cbotu_EstB appears more narrowed compared to the crystal structure of Cbotu_EstA and the N-terminus is shorter which could explain its lower activity on PBAT. The Cbotu_EstA crystal structure consists of two regions that may act as movable cap domains and a zinc metal binding site.


  • Organizational Affiliation

    acib-Austrian Centre of Industrial Biotechnology, Konrad Lorenz Strasse 20, Tulln, 3430, Austria.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
TRIACYLGLYCEROL LIPASE461Clostridium botulinumMutation(s): 0 
EC: 3.1.1.3
UniProt
Find proteins for A5I055 (Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A))
Explore A5I055 
Go to UniProtKB:  A5I055
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA5I055
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.20 Å
  • R-Value Free: 0.149 
  • R-Value Work: 0.129 
  • R-Value Observed: 0.130 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 51.24α = 90
b = 64.71β = 106.93
c = 69.79γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
SCALAdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History 

Revision History  (Full details and data files)

  • Version 1.0: 2015-11-11
    Type: Initial release
  • Version 1.1: 2016-04-13
    Changes: Database references
  • Version 2.0: 2019-10-23
    Changes: Atomic model, Data collection, Other
  • Version 2.1: 2024-01-10
    Changes: Data collection, Database references, Derived calculations, Refinement description