5Y11
SFTSV GN with neutralizing antibody MAb4-5
- PDB DOI: https://doi.org/10.2210/pdb5Y11/pdb
- Classification: IMMUNE SYSTEM/VIRAL SYSTEM
- Organism(s): Homo sapiens, Severe fever with thrombocytopenia syndrome virus
- Expression System: Mammalia, Baculovirus expression vector pFastBac1-HM
- Mutation(s): No 
- Deposited: 2017-07-19 Released: 2017-09-13 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.210 
- R-Value Work: 0.169 
- R-Value Observed: 0.171 
wwPDB Validation   3D Report Full Report
This is version 2.0 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
MAb 4-5 heavy chain | 229 | Homo sapiens | Mutation(s): 0  | ||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
MAb 4-5 light chain | 222 | Homo sapiens | Mutation(s): 0  | ||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 3 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Membrane glycoprotein polyprotein | 321 | Severe fever with thrombocytopenia syndrome virus | Mutation(s): 0  | ||
UniProt | |||||
Find proteins for R4V2Q5 (Dabie bandavirus) Explore R4V2Q5  Go to UniProtKB:  R4V2Q5 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | R4V2Q5 | ||||
Sequence AnnotationsExpand | |||||
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Oligosaccharides
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.210 
- R-Value Work: 0.169 
- R-Value Observed: 0.171 
- Space Group: P 21 21 21
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 82.605 | α = 90 |
b = 103.194 | β = 90 |
c = 112.031 | γ = 90 |
Software Name | Purpose |
---|---|
PHENIX | refinement |
HKL-2000 | data reduction |
HKL-2000 | data scaling |
PHASER | phasing |
Entry History 
Deposition Data
Revision History (Full details and data files)
- Version 1.0: 2017-09-13
Type: Initial release - Version 1.1: 2017-09-20
Changes: Database references - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Advisory, Atomic model, Data collection, Derived calculations, Structure summary