5XUR

Crystal Structure of Rv2466c C22S Mutant


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.186 
  • R-Value Work: 0.157 
  • R-Value Observed: 0.158 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Identification of a Mycothiol-Dependent Nitroreductase from Mycobacterium tuberculosis.

Negri, A.Javidnia, P.Mu, R.Zhang, X.Vendome, J.Gold, B.Roberts, J.Barman, D.Ioerger, T.Sacchettini, J.C.Jiang, X.Burns-Huang, K.Warrier, T.Ling, Y.Warren, J.D.Oren, D.A.Beuming, T.Wang, H.Wu, J.Li, H.Rhee, K.Y.Nathan, C.F.Liu, G.Somersan-Karakaya, S.

(2018) ACS Infect Dis 4: 771-787

  • DOI: https://doi.org/10.1021/acsinfecdis.7b00111
  • Primary Citation of Related Structures:  
    5XUR

  • PubMed Abstract: 

    The success of Mycobacterium tuberculosis (Mtb) as a pathogen depends on the redundant and complex mechanisms it has evolved for resisting nitrosative and oxidative stresses inflicted by host immunity. Improving our understanding of these defense pathways can reveal vulnerable points in Mtb pathogenesis. In this study, we combined genetic, structural, computational, biochemical, and biophysical approaches to identify a novel enzyme class represented by Rv2466c. We show that Rv2466c is a mycothiol-dependent nitroreductase of Mtb and can reduce the nitro group of a novel mycobactericidal compound using mycothiol as a cofactor. In addition to its function as a nitroreductase, Rv2466c confers partial protection to menadione stress.


  • Organizational Affiliation

    Schrödinger, Inc. , 120 West 45th Street , New York , New York 10036 , United States.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Thioredoxin-like reductase Rv2466c
A, B, C, D
215Mycobacterium tuberculosis H37RvMutation(s): 1 
Gene Names: Rv2466cRVBD_2466cLH57_13485P425_02568
UniProt
Find proteins for O53193 (Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv))
Explore O53193 
Go to UniProtKB:  O53193
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO53193
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.186 
  • R-Value Work: 0.157 
  • R-Value Observed: 0.158 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 73.391α = 90
b = 58.767β = 100.67
c = 109.331γ = 90
Software Package:
Software NamePurpose
DENZOdata collection
SCALEPACKdata scaling
PHENIXrefinement
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2018-03-14
    Type: Initial release
  • Version 1.1: 2018-05-23
    Changes: Data collection, Database references
  • Version 1.2: 2023-11-22
    Changes: Data collection, Database references, Refinement description