5VPO

The 70S P-site ASL SufA6 complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.34 Å
  • R-Value Free: 0.267 
  • R-Value Work: 0.237 
  • R-Value Observed: 0.239 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Mechanism of tRNA-mediated +1 ribosomal frameshifting.

Hong, S.Sunita, S.Maehigashi, T.Hoffer, E.D.Dunkle, J.A.Dunham, C.M.

(2018) Proc Natl Acad Sci U S A 115: 11226-11231

  • DOI: https://doi.org/10.1073/pnas.1809319115
  • Primary Citation of Related Structures:  
    5VPO, 5VPP

  • PubMed Abstract: 

    Accurate translation of the genetic code is critical to ensure expression of proteins with correct amino acid sequences. Certain tRNAs can cause a shift out of frame (i.e., frameshifting) due to imbalances in tRNA concentrations, lack of tRNA modifications or insertions or deletions in tRNAs (called frameshift suppressors). Here, we determined the structural basis for how frameshift-suppressor tRNA SufA6 (a derivative of tRNA Pro ) reprograms the mRNA frame to translate a 4-nt codon when bound to the bacterial ribosome. After decoding at the aminoacyl (A) site, the crystal structure of the anticodon stem-loop of tRNA SufA6 bound in the peptidyl (P) site reveals ASL conformational changes that allow for recoding into the +1 mRNA frame. Furthermore, a crystal structure of full-length tRNA SufA6 programmed in the P site shows extensive conformational rearrangements of the 30S head and body domains similar to what is observed in a translocation intermediate state containing elongation factor G (EF-G). The 30S movement positions tRNA SufA6 toward the 30S exit (E) site disrupting key 16S rRNA-mRNA interactions that typically define the mRNA frame. In summary, this tRNA-induced 30S domain change in the absence of EF-G causes the ribosome to lose its grip on the mRNA and uncouples the canonical forward movement of the tRNAs during elongation.


  • Organizational Affiliation

    Department of Biochemistry, Emory University School of Medicine, Atlanta, GA 30322.


Macromolecules

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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S2D [auth QB],
DB [auth XB]
256Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S3E [auth QC],
EB [auth XC]
239Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S4F [auth QD],
FB [auth XD]
209Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S5G [auth QE],
GB [auth XE]
162Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S6H [auth QF],
HB [auth XF]
101Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S7I [auth QG],
IB [auth XG]
156Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S8J [auth QH],
JB [auth XH]
138Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S9K [auth QI],
KB [auth XI]
128Thermus thermophilus HB8Mutation(s): 0 
UniProt
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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S10L [auth QJ],
LB [auth XJ]
105Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S11M [auth QK],
MB [auth XK]
129Thermus thermophilus HB8Mutation(s): 0 
UniProt
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Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S12N [auth QL],
NB [auth XL]
132Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S13O [auth QM],
OB [auth XM]
126Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 15
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S14 type ZP [auth QN],
PB [auth XN]
61Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 16
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S15Q [auth QO],
QB [auth XO]
89Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 17
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S16R [auth QP],
RB [auth XP]
88Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 18
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S17S [auth QQ],
SB [auth XQ]
105Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 19
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S18T [auth QR],
TB [auth XR]
88Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 20
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S19U [auth QS],
UB [auth XS]
93Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 21
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S20V [auth QT],
VB [auth XT]
106Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 22
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein ThxW [auth QU],
WB [auth XU]
27Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 25
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L2Z [auth RD],
ZB [auth YD]
276Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 26
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L3AA [auth RE],
AC [auth YE]
206Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 27
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L4BA [auth RF],
BC [auth YF]
210Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 28
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L5CA [auth RG],
CC [auth YG]
182Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 29
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L6DA [auth RH],
DC [auth YH]
180Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 30
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L9EA [auth RI],
EC [auth YI]
148Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 31
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L13FA [auth RN],
FC [auth YN]
140Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 32
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L14GA [auth RO],
GC [auth YO]
122Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 33
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L15HA [auth RP],
HC [auth YP]
150Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 34
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L16IA [auth RQ],
IC [auth YQ]
141Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 35
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L17JA [auth RR],
JC [auth YR]
118Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 36
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L18KA [auth RS],
KC [auth YS]
112Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 37
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L19LA [auth RT],
LC [auth YT]
146Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 38
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L20MA [auth RU],
MC [auth YU]
118Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 39
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L21NA [auth RV],
NC [auth YV]
101Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 40
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L22OA [auth RW],
OC [auth YW]
113Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 41
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L23PA [auth RX],
PC [auth YX]
96Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 42
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L24QA [auth RY],
QC [auth YY]
110Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 43
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L25RA [auth RZ],
RC [auth YZ]
206Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 44
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L27SA [auth R0],
SC [auth Y0]
85Thermus thermophilus HB8Mutation(s): 0 
UniProt
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Entity ID: 45
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L28TA [auth R1],
TC [auth Y1]
98Thermus thermophilus HB8Mutation(s): 0 
UniProt
Find proteins for P60494 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8))
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UniProt GroupP60494
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Entity ID: 46
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L29UA [auth R2],
UC [auth Y2]
72Thermus thermophilus HB8Mutation(s): 0 
UniProt
Find proteins for Q5SHP6 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8))
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Entity ID: 47
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L30VA [auth R3],
VC [auth Y3]
60Thermus thermophilus HB8Mutation(s): 0 
UniProt
Find proteins for Q5SHQ6 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8))
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Entity ID: 48
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L31WA [auth R4],
WC [auth Y4]
71Thermus thermophilus HB8Mutation(s): 0 
UniProt
Find proteins for Q5SJE1 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8))
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Entity ID: 49
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L32XA [auth R5],
XC [auth Y5]
60Thermus thermophilus HB8Mutation(s): 0 
UniProt
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Entity ID: 50
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L33YA [auth R6],
YC [auth Y6]
54Thermus thermophilus HB8Mutation(s): 0 
UniProt
Find proteins for P35871 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8))
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Entity ID: 51
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L34ZA [auth R7],
ZC [auth Y7]
49Thermus thermophilus HB8Mutation(s): 0 
UniProt
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Entity ID: 52
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L35AB [auth R8],
AD [auth Y8]
65Thermus thermophilus HB8Mutation(s): 0 
UniProt
Find proteins for Q5SKU1 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8))
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Entity ID: 53
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L36BB [auth R9],
BD [auth Y9]
37Thermus thermophilus HB8Mutation(s): 0 
UniProt
Find proteins for Q5SHR2 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8))
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Entity ID: 1
MoleculeChains LengthOrganismImage
messenger RNAA [auth QX],
B [auth XX]
19Escherichia coli
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Entity ID: 2
MoleculeChains LengthOrganismImage
16S rRNAC [auth QA],
CB [auth XA]
1,521Thermus thermophilus HB8
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Entity ID: 23
MoleculeChains LengthOrganismImage
23S rRNAX [auth RA],
XB [auth YA]
2,915Thermus thermophilus HB8
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Entity ID: 24
MoleculeChains LengthOrganismImage
5S rRNAY [auth RB],
YB
122Thermus thermophilus HB8
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Entity ID: 54
MoleculeChains LengthOrganismImage
P-site ASL SufA6CD [auth XV],
DD [auth QV]
18Escherichia coli K-12
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Small Molecules
Ligands 2 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download Ideal Coordinates CCD File 
NS [auth XD],
QS [auth XN],
SF [auth QD],
WF [auth QN]
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
MG
Query on MG

Download Ideal Coordinates CCD File 
AAA [auth YA]
ABA [auth YA]
ACA [auth YA]
ADA [auth YB]
AE [auth QA]
AAA [auth YA],
ABA [auth YA],
ACA [auth YA],
ADA [auth YB],
AE [auth QA],
AF [auth QA],
AG [auth RA],
AH [auth RA],
AI [auth RA],
AJ [auth RA],
AK [auth RA],
AL [auth RA],
AM [auth RA],
AN [auth RA],
AO [auth RA],
AP [auth RA],
AQ [auth XA],
AR [auth XA],
AS [auth XA],
AT [auth YA],
AU [auth YA],
AV [auth YA],
AW [auth YA],
AX [auth YA],
AY [auth YA],
AZ [auth YA],
BAA [auth YA],
BBA [auth YA],
BCA [auth YA],
BDA [auth YB],
BE [auth QA],
BF [auth QA],
BG [auth RA],
BH [auth RA],
BI [auth RA],
BJ [auth RA],
BK [auth RA],
BL [auth RA],
BM [auth RA],
BN [auth RA],
BO [auth RA],
BP [auth RA],
BQ [auth XA],
BR [auth XA],
BS [auth XA],
BT [auth YA],
BU [auth YA],
BV [auth YA],
BW [auth YA],
BX [auth YA],
BY [auth YA],
BZ [auth YA],
CAA [auth YA],
CBA [auth YA],
CCA [auth YA],
CDA [auth YD],
CE [auth QA],
CF [auth QA],
CG [auth RA],
CH [auth RA],
CI [auth RA],
CJ [auth RA],
CK [auth RA],
CL [auth RA],
CM [auth RA],
CN [auth RA],
CO [auth RA],
CP [auth RA],
CQ [auth XA],
CR [auth XA],
CS [auth XA],
CT [auth YA],
CU [auth YA],
CV [auth YA],
CW [auth YA],
CX [auth YA],
CY [auth YA],
CZ [auth YA],
DAA [auth YA],
DBA [auth YA],
DCA [auth YA],
DDA [auth YD],
DE [auth QA],
DF [auth QA],
DG [auth RA],
DH [auth RA],
DI [auth RA],
DJ [auth RA],
DK [auth RA],
DL [auth RA],
DM [auth RA],
DN [auth RA],
DO [auth RA],
DP [auth RA],
DQ [auth XA],
DR [auth XA],
DS [auth XA],
DT [auth YA],
DU [auth YA],
DV [auth YA],
DW [auth YA],
DX [auth YA],
DY [auth YA],
DZ [auth YA],
EAA [auth YA],
EBA [auth YA],
ECA [auth YA],
ED [auth QA],
EDA [auth YE],
EE [auth QA],
EF [auth QA],
EG [auth RA],
EH [auth RA],
EI [auth RA],
EJ [auth RA],
EK [auth RA],
EL [auth RA],
EM [auth RA],
EN [auth RA],
EO [auth RA],
EP [auth RA],
EQ [auth XA],
ER [auth XA],
ES [auth XA],
ET [auth YA],
EU [auth YA],
EV [auth YA],
EW [auth YA],
EX [auth YA],
EY [auth YA],
EZ [auth YA],
FAA [auth YA],
FBA [auth YA],
FCA [auth YA],
FD [auth QA],
FDA [auth YP],
FE [auth QA],
FF [auth QA],
FG [auth RA],
FH [auth RA],
FI [auth RA],
FJ [auth RA],
FK [auth RA],
FL [auth RA],
FM [auth RA],
FN [auth RA],
FO [auth RA],
FP [auth RA],
FQ [auth XA],
FR [auth XA],
FS [auth XA],
FT [auth YA],
FU [auth YA],
FV [auth YA],
FW [auth YA],
FX [auth YA],
FY [auth YA],
FZ [auth YA],
GAA [auth YA],
GBA [auth YA],
GCA [auth YA],
GD [auth QA],
GDA [auth YP],
GE [auth QA],
GF [auth QA],
GG [auth RA],
GH [auth RA],
GI [auth RA],
GJ [auth RA],
GK [auth RA],
GL [auth RA],
GM [auth RA],
GN [auth RA],
GO [auth RA],
GP [auth RB],
GQ [auth XA],
GR [auth XA],
GS [auth XA],
GT [auth YA],
GU [auth YA],
GV [auth YA],
GW [auth YA],
GX [auth YA],
GY [auth YA],
GZ [auth YA],
HAA [auth YA],
HBA [auth YA],
HCA [auth YA],
HD [auth QA],
HDA [auth YX],
HE [auth QA],
HF [auth QA],
HG [auth RA],
HH [auth RA],
HI [auth RA],
HJ [auth RA],
HK [auth RA],
HL [auth RA],
HM [auth RA],
HN [auth RA],
HO [auth RA],
HP [auth RB],
HQ [auth XA],
HR [auth XA],
HS [auth XA],
HT [auth YA],
HU [auth YA],
HV [auth YA],
HW [auth YA],
HX [auth YA],
HY [auth YA],
HZ [auth YA],
IAA [auth YA],
IBA [auth YA],
ICA [auth YA],
ID [auth QA],
IDA [auth Y5],
IE [auth QA],
IF [auth QA],
IG [auth RA],
IH [auth RA],
II [auth RA],
IJ [auth RA],
IK [auth RA],
IL [auth RA],
IM [auth RA],
IN [auth RA],
IO [auth RA],
IP [auth RD],
IQ [auth XA],
IR [auth XA],
IS [auth XA],
IT [auth YA],
IU [auth YA],
IV [auth YA],
IW [auth YA],
IX [auth YA],
IY [auth YA],
IZ [auth YA],
JAA [auth YA],
JBA [auth YA],
JCA [auth YA],
JD [auth QA],
JE [auth QA],
JF [auth QA],
JG [auth RA],
JH [auth RA],
JI [auth RA],
JJ [auth RA],
JK [auth RA],
JL [auth RA],
JM [auth RA],
JN [auth RA],
JO [auth RA],
JP [auth RE],
JQ [auth XA],
JR [auth XA],
JS [auth XA],
JT [auth YA],
JU [auth YA],
JV [auth YA],
JW [auth YA],
JX [auth YA],
JY [auth YA],
JZ [auth YA],
KAA [auth YA],
KBA [auth YA],
KCA [auth YA],
KD [auth QA],
KE [auth QA],
KF [auth QA],
KG [auth RA],
KH [auth RA],
KI [auth RA],
KJ [auth RA],
KK [auth RA],
KL [auth RA],
KM [auth RA],
KN [auth RA],
KO [auth RA],
KP [auth RE],
KQ [auth XA],
KR [auth XA],
KS [auth XA],
KT [auth YA],
KU [auth YA],
KV [auth YA],
KW [auth YA],
KX [auth YA],
KY [auth YA],
KZ [auth YA],
LAA [auth YA],
LBA [auth YA],
LCA [auth YA],
LD [auth QA],
LE [auth QA],
LF [auth QA],
LG [auth RA],
LH [auth RA],
LI [auth RA],
LJ [auth RA],
LK [auth RA],
LL [auth RA],
LM [auth RA],
LN [auth RA],
LO [auth RA],
LP [auth RF],
LQ [auth XA],
LR [auth XA],
LS [auth XA],
LT [auth YA],
LU [auth YA],
LV [auth YA],
LW [auth YA],
LX [auth YA],
LY [auth YA],
LZ [auth YA],
MAA [auth YA],
MBA [auth YA],
MCA [auth YA],
MD [auth QA],
ME [auth QA],
MF [auth QA],
MG [auth RA],
MH [auth RA],
MI [auth RA],
MJ [auth RA],
MK [auth RA],
ML [auth RA],
MM [auth RA],
MN [auth RA],
MO [auth RA],
MP [auth RP],
MQ [auth XA],
MR [auth XA],
MS [auth XB],
MT [auth YA],
MU [auth YA],
MV [auth YA],
MW [auth YA],
MX [auth YA],
MY [auth YA],
MZ [auth YA],
NAA [auth YA],
NBA [auth YA],
NCA [auth YA],
ND [auth QA],
NE [auth QA],
NF [auth QA],
NG [auth RA],
NH [auth RA],
NI [auth RA],
NJ [auth RA],
NK [auth RA],
NL [auth RA],
NM [auth RA],
NN [auth RA],
NO [auth RA],
NP [auth RP],
NQ [auth XA],
NR [auth XA],
NT [auth YA],
NU [auth YA],
NV [auth YA],
NW [auth YA],
NX [auth YA],
NY [auth YA],
NZ [auth YA],
OAA [auth YA],
OBA [auth YA],
OCA [auth YA],
OD [auth QA],
OE [auth QA],
OF [auth QA],
OG [auth RA],
OH [auth RA],
OI [auth RA],
OJ [auth RA],
OK [auth RA],
OL [auth RA],
OM [auth RA],
ON [auth RA],
OO [auth RA],
OP [auth RR],
OQ [auth XA],
OR [auth XA],
OS [auth XL],
OT [auth YA],
OU [auth YA],
OV [auth YA],
OW [auth YA],
OX [auth YA],
OY [auth YA],
OZ [auth YA],
PAA [auth YA],
PBA [auth YA],
PCA [auth YA],
PD [auth QA],
PE [auth QA],
PF [auth QA],
PG [auth RA],
PH [auth RA],
PI [auth RA],
PJ [auth RA],
PK [auth RA],
PL [auth RA],
PM [auth RA],
PN [auth RA],
PO [auth RA],
PP [auth R0],
PQ [auth XA],
PR [auth XA],
PS [auth XM],
PT [auth YA],
PU [auth YA],
PV [auth YA],
PW [auth YA],
PX [auth YA],
PY [auth YA],
PZ [auth YA],
QAA [auth YA],
QBA [auth YA],
QCA [auth YA],
QD [auth QA],
QE [auth QA],
QF [auth QA],
QG [auth RA],
QH [auth RA],
QI [auth RA],
QJ [auth RA],
QK [auth RA],
QL [auth RA],
QM [auth RA],
QN [auth RA],
QO [auth RA],
QP [auth R3],
QQ [auth XA],
QR [auth XA],
QT [auth YA],
QU [auth YA],
QV [auth YA],
QW [auth YA],
QX [auth YA],
QY [auth YA],
QZ [auth YA],
RAA [auth YA],
RBA [auth YA],
RCA [auth YA],
RD [auth QA],
RE [auth QA],
RF [auth QA],
RG [auth RA],
RH [auth RA],
RI [auth RA],
RJ [auth RA],
RK [auth RA],
RL [auth RA],
RM [auth RA],
RN [auth RA],
RO [auth RA],
RP [auth R5],
RQ [auth XA],
RR [auth XA],
RS [auth YA],
RT [auth YA],
RU [auth YA],
RV [auth YA],
RW [auth YA],
RX [auth YA],
RY [auth YA],
RZ [auth YA],
SAA [auth YA],
SBA [auth YA],
SCA [auth YA],
SD [auth QA],
SE [auth QA],
SG [auth RA],
SH [auth RA],
SI [auth RA],
SJ [auth RA],
SK [auth RA],
SL [auth RA],
SM [auth RA],
SN [auth RA],
SO [auth RA],
SP [auth R8],
SQ [auth XA],
SR [auth XA],
SS [auth YA],
ST [auth YA],
SU [auth YA],
SV [auth YA],
SW [auth YA],
SX [auth YA],
SY [auth YA],
SZ [auth YA],
TAA [auth YA],
TBA [auth YA],
TCA [auth YA],
TD [auth QA],
TE [auth QA],
TF [auth QF],
TG [auth RA],
TH [auth RA],
TI [auth RA],
TJ [auth RA],
TK [auth RA],
TL [auth RA],
TM [auth RA],
TN [auth RA],
TO [auth RA],
TP [auth XA],
TQ [auth XA],
TR [auth XA],
TS [auth YA],
TT [auth YA],
TU [auth YA],
TV [auth YA],
TW [auth YA],
TX [auth YA],
TY [auth YA],
TZ [auth YA],
UAA [auth YA],
UBA [auth YA],
UCA [auth YA],
UD [auth QA],
UE [auth QA],
UF [auth QH],
UG [auth RA],
UH [auth RA],
UI [auth RA],
UJ [auth RA],
UK [auth RA],
UL [auth RA],
UM [auth RA],
UN [auth RA],
UO [auth RA],
UP [auth XA],
UQ [auth XA],
UR [auth XA],
US [auth YA],
UT [auth YA],
UU [auth YA],
UV [auth YA],
UW [auth YA],
UX [auth YA],
UY [auth YA],
UZ [auth YA],
VAA [auth YA],
VBA [auth YA],
VCA [auth YA],
VD [auth QA],
VE [auth QA],
VF [auth QM],
VG [auth RA],
VH [auth RA],
VI [auth RA],
VJ [auth RA],
VK [auth RA],
VL [auth RA],
VM [auth RA],
VN [auth RA],
VO [auth RA],
VP [auth XA],
VQ [auth XA],
VR [auth XA],
VS [auth YA],
VT [auth YA],
VU [auth YA],
VV [auth YA],
VW [auth YA],
VX [auth YA],
VY [auth YA],
VZ [auth YA],
WAA [auth YA],
WBA [auth YA],
WCA [auth YA],
WD [auth QA],
WE [auth QA],
WG [auth RA],
WH [auth RA],
WI [auth RA],
WJ [auth RA],
WK [auth RA],
WL [auth RA],
WM [auth RA],
WN [auth RA],
WO [auth RA],
WP [auth XA],
WQ [auth XA],
WR [auth XA],
WS [auth YA],
WT [auth YA],
WU [auth YA],
WV [auth YA],
WW [auth YA],
WX [auth YA],
WY [auth YA],
WZ [auth YA],
XAA [auth YA],
XBA [auth YA],
XCA [auth YA],
XD [auth QA],
XE [auth QA],
XF [auth RA],
XG [auth RA],
XH [auth RA],
XI [auth RA],
XJ [auth RA],
XK [auth RA],
XL [auth RA],
XM [auth RA],
XN [auth RA],
XO [auth RA],
XP [auth XA],
XQ [auth XA],
XR [auth XA],
XS [auth YA],
XT [auth YA],
XU [auth YA],
XV [auth YA],
XW [auth YA],
XX [auth YA],
XY [auth YA],
XZ [auth YA],
YAA [auth YA],
YBA [auth YA],
YCA [auth YB],
YD [auth QA],
YE [auth QA],
YF [auth RA],
YG [auth RA],
YH [auth RA],
YI [auth RA],
YJ [auth RA],
YK [auth RA],
YL [auth RA],
YM [auth RA],
YN [auth RA],
YO [auth RA],
YP [auth XA],
YQ [auth XA],
YR [auth XA],
YS [auth YA],
YT [auth YA],
YU [auth YA],
YV [auth YA],
YW [auth YA],
YX [auth YA],
YY [auth YA],
YZ [auth YA],
ZAA [auth YA],
ZBA [auth YA],
ZCA [auth YB],
ZD [auth QA],
ZE [auth QA],
ZF [auth RA],
ZG [auth RA],
ZH [auth RA],
ZI [auth RA],
ZJ [auth RA],
ZK [auth RA],
ZL [auth RA],
ZM [auth RA],
ZN [auth RA],
ZO [auth RA],
ZP [auth XA],
ZQ [auth XA],
ZR [auth XA],
ZS [auth YA],
ZT [auth YA],
ZU [auth YA],
ZV [auth YA],
ZW [auth YA],
ZX [auth YA],
ZY [auth YA],
ZZ [auth YA]
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.34 Å
  • R-Value Free: 0.267 
  • R-Value Work: 0.237 
  • R-Value Observed: 0.239 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 210.116α = 90
b = 448.512β = 90
c = 621.968γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2018-09-26
    Type: Initial release
  • Version 1.1: 2018-10-10
    Changes: Data collection, Database references, Structure summary
  • Version 1.2: 2018-11-07
    Changes: Data collection, Database references, Structure summary