Download MendeleyThe crystal structure of cupin protein from Rhodococcus jostii RHA1
Tan, K., Li, H., Clancy, S., Phillips Jr., G.N., Joachimiak, A.To be published.
5UQP
The crystal structure of cupin protein from Rhodococcus jostii RHA1
- PDB DOI: https://doi.org/10.2210/pdb5UQP/pdb
- Classification: UNKNOWN FUNCTION
- Organism(s): Rhodococcus jostii RHA1
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2017-02-08 Released: 2017-02-22
- Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.40 Å
- R-Value Free: 0.200
- R-Value Work: 0.166
- R-Value Observed: 0.168
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Cupin | 125 | Rhodococcus jostii RHA1 | Mutation(s): 0 Gene Names: RHA1_ro08652 |  | |
UniProt | |||||
Find proteins for Q0RYE0 (Rhodococcus jostii (strain RHA1)) Explore Q0RYE0 Go to UniProtKB: Q0RYE0 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q0RYE0 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | G [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| ZN Query on ZN | C [auth A], H [auth B] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
| CL Query on CL | D [auth A], E [auth A], F [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.40 Å
- R-Value Free: 0.200
- R-Value Work: 0.166
- R-Value Observed: 0.168
- Space Group: P 61 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 139.448 | α = 90 |
| b = 139.448 | β = 90 |
| c = 80.075 | γ = 120 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| HKL-3000 | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2017-02-22 Deposition Author(s): Tan, K., Li, H., Clancy, S., Phillips Jr., G.N., Joachimiak, A., Midwest Center for Structural Genomics (MCSG), Enzyme Discovery for Natural Product Biosynthesis (NatPro)
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | GM115586 |
Revision History (Full details and data files)
- Version 1.0: 2017-02-22
Type: Initial release - Version 1.1: 2017-09-20
Changes: Author supporting evidence - Version 1.2: 2020-01-01
Changes: Author supporting evidence - Version 1.3: 2024-03-06
Changes: Data collection, Database references, Derived calculations
