Download MendeleyThe Crystal Structure of Human Pseudouridylate Synthase Domain Containing 4. To be published
ZENG, H., DONG, A., TEMPEL, W., Bountra, C., Arrowsmith, C.H., Edwards, A.M., BROWN, P.J., WU, H., Structural Genomics Consortium (SGC)To be published.
5UBA
Human RNA Pseudouridylate Synthase Domain Containing 4
- PDB DOI: https://doi.org/10.2210/pdb5UBA/pdb
- Classification: RNA BINDING PROTEIN
- Organism(s): Homo sapiens
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2016-12-20 Released: 2017-02-22
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.54 Å
- R-Value Free: 0.212
- R-Value Work: 0.198
- R-Value Observed: 0.198
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| RNA pseudouridylate synthase domain-containing protein 4 | 295 | Homo sapiens | Mutation(s): 0 Gene Names: RPUSD4 |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q96CM3 (Homo sapiens) Explore Q96CM3 Go to UniProtKB: Q96CM3 | |||||
PHAROS: Q96CM3 GTEx: ENSG00000165526 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q96CM3 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| CA Query on CA | E [auth A] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | ||
| CL Query on CL | B [auth A], C [auth A], D [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
| UNX Query on UNX | F [auth A], G [auth A] | UNKNOWN ATOM OR ION X |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.54 Å
- R-Value Free: 0.212
- R-Value Work: 0.198
- R-Value Observed: 0.198
- Space Group: P 43
- Diffraction Data: https://doi.org/10.18430/M35UBA
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 54.189 | α = 90 |
| b = 54.189 | β = 90 |
| c = 105.349 | γ = 90 |
| Software Name | Purpose |
|---|---|
| HKL-3000 | data scaling |
| PHASER | phasing |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| HKL-3000 | phasing |
| DENZO | data reduction |
| SCALEPACK | data scaling |
Entry History
Deposition Data
- Released Date: 2017-02-22 Deposition Author(s): DONG, A., ZENG, H., TEMPEL, W., Bountra, C., Arrowsmith, C.H., Edwards, A.M., BROWN, P.J., WU, H., Structural Genomics Consortium (SGC)
Revision History (Full details and data files)
- Version 1.0: 2017-02-22
Type: Initial release - Version 1.1: 2017-11-22
Changes: Refinement description - Version 1.2: 2018-04-18
Changes: Data collection - Version 1.3: 2023-10-04
Changes: Data collection, Database references, Refinement description
