5TDL
Crystal structure of prefusion-stabilized bovine RSV fusion glycoprotein (single-chain DS2-v1 variant: strain 391-2 sc9 DS-Cav1 Q98C Q361C)
- PDB DOI: https://doi.org/10.2210/pdb5TDL/pdb
- Classification: VIRAL PROTEIN
- Organism(s): Bovine respiratory syncytial virus (strain Copenhagen), Tequatrovirus T4
- Expression System: Homo sapiens
- Mutation(s): Yes
- Deposited: 2016-09-19 Released: 2017-08-16
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 3.50 Å
- R-Value Free: 0.272
- R-Value Work: 0.256
- R-Value Observed: 0.257
This is version 1.2 of the entry. See complete history.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Bovine prefusion RSV F glycoprotein | 531 | Bovine respiratory syncytial virus (strain Copenhagen), Tequatrovirus T4 | Mutation(s): 8 |  | |
UniProt | |||||
Find proteins for P22167 (Bovine respiratory syncytial virus (strain Copenhagen)) Explore P22167 Go to UniProtKB: P22167 | |||||
Find proteins for P10104 (Enterobacteria phage T4) Explore P10104 Go to UniProtKB: P10104 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Groups | P22167P10104 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NAG Query on NAG | B [auth A] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 3.50 Å
- R-Value Free: 0.272
- R-Value Work: 0.256
- R-Value Observed: 0.257
- Space Group: P 41 3 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 172.072 | α = 90 |
| b = 172.072 | β = 90 |
| c = 172.072 | γ = 90 |
| Software Name | Purpose |
|---|---|
| HKL-2000 | data scaling |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| HKL-2000 | data reduction |
| PHASER | phasing |
Entry History
Deposition Data
- Released Date: 2017-08-16 Deposition Author(s): Chen, L., Zhang, B., Kwong, P.D.
Revision History (Full details and data files)
- Version 1.0: 2017-08-16
Type: Initial release - Version 1.1: 2017-10-25
Changes: Database references - Version 1.2: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Data collection, Derived calculations, Structure summary
