5TDG
Crystal structure of prefusion-stabilized bovine RSV F (DS-Cav1 variant: strain ATue51908)
- PDB DOI: https://doi.org/10.2210/pdb5TDG/pdb
- Classification: VIRAL PROTEIN
- Organism(s): Bovine orthopneumovirus, Tequatrovirus T2
- Expression System: Homo sapiens
- Mutation(s): Yes 
- Deposited: 2016-09-19 Released: 2017-08-16 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.65 Å
- R-Value Free: 0.249 
- R-Value Work: 0.205 
- R-Value Observed: 0.207 
This is version 1.2 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Fusion glycoprotein F0,Fibritin | 519 | Bovine orthopneumovirus, Tequatrovirus T2 This entity is chimeric | Mutation(s): 4  | ||
UniProt | |||||
Find proteins for Q9YS24 (Bovine orthopneumovirus) Explore Q9YS24  Go to UniProtKB:  Q9YS24 | |||||
Find proteins for Q76VI8 (Tequatrovirus T2) Explore Q76VI8  Go to UniProtKB:  Q76VI8 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Groups | Q9YS24Q76VI8 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
Ligands 1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NAG Query on NAG | D [auth A], E [auth B], F [auth C] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.65 Å
- R-Value Free: 0.249 
- R-Value Work: 0.205 
- R-Value Observed: 0.207 
- Space Group: P 1 21 1
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 73.069 | α = 90 |
b = 127.033 | β = 93.91 |
c = 92.427 | γ = 90 |
Software Name | Purpose |
---|---|
REFMAC | refinement |
HKL-2000 | data scaling |
PDB_EXTRACT | data extraction |
HKL-2000 | data reduction |
PHASER | phasing |
Entry History 
Deposition Data
- Released Date: 2017-08-16  Deposition Author(s): Chen, L., Zhang, B., Kwong, P.D.
Revision History (Full details and data files)
- Version 1.0: 2017-08-16
Type: Initial release - Version 1.1: 2017-10-25
Changes: Database references - Version 1.2: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Data collection, Derived calculations, Structure summary