Download MendeleyCrystal Structure of a S-adenosylmethionine Synthase from Neisseria gonorrhoeae with bound AMP and Magnesium
Dranow, D.M., Delker, S.L., Lorimer, D.D., Edwards, T.E.To be published.
5T8T
Crystal Structure of a S-adenosylmethionine Synthase from Neisseria gonorrhoeae with bound AMP and Magnesium
- PDB DOI: https://doi.org/10.2210/pdb5T8T/pdb
- Classification: TRANSFERASE
- Organism(s): Neisseria gonorrhoeae FA 1090
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2016-09-08 Released: 2016-09-28
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.205
- R-Value Work: 0.170
- R-Value Observed: 0.172
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| S-adenosylmethionine synthase | 397 | Neisseria gonorrhoeae FA 1090 | Mutation(s): 0 Gene Names: metK, NGO0106 EC: 2.5.1.6 |  | |
UniProt | |||||
Find proteins for Q5FAC0 (Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090)) Explore Q5FAC0 Go to UniProtKB: Q5FAC0 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q5FAC0 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| AMP Query on AMP | C [auth B] | ADENOSINE MONOPHOSPHATE C10 H14 N5 O7 P UDMBCSSLTHHNCD-KQYNXXCUSA-N |  | ||
| MG Query on MG | D [auth B] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.205
- R-Value Work: 0.170
- R-Value Observed: 0.172
- Space Group: P 41 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 116.58 | α = 90 |
| b = 116.58 | β = 90 |
| c = 145.6 | γ = 90 |
| Software Name | Purpose |
|---|---|
| XSCALE | data scaling |
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
| XDS | data reduction |
| PHENIX | phasing |
Entry History
Deposition Data
- Released Date: 2016-09-28 Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Revision History (Full details and data files)
- Version 1.0: 2016-09-28
Type: Initial release - Version 1.1: 2016-10-05
Changes: Data collection - Version 1.2: 2023-10-04
Changes: Data collection, Database references, Derived calculations, Refinement description
