Download MendeleyStructure of DC8E8 Fab at pH 6.5 crystallized in space-group P1
Skrabana, R., Novak, M., Cehlar, O., Kontsekova, E.To be published.
5MVJ
Structure of DC8E8 Fab at pH 6.5 crystallized in space-group P1
- PDB DOI: https://doi.org/10.2210/pdb5MVJ/pdb
- Classification: IMMUNE SYSTEM
- Organism(s): Mus musculus
- Mutation(s): No
- Deposited: 2017-01-16 Released: 2018-05-02
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.50 Å
- R-Value Free: 0.272
- R-Value Work: 0.219
- R-Value Observed: 0.222
wwPDB Validation 3D Report Full Report
This is version 2.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| antibody Fab heavy chain | A [auth H], C [auth A], E [auth C], G [auth E] | 221 | Mus musculus | Mutation(s): 0 |  |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| antibody kappa chain | B [auth L], D [auth B], F [auth D], H [auth F] | 219 | Mus musculus | Mutation(s): 0 |  |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| CL Query on CL | I [auth F] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| PCA Query on PCA | A [auth H], C [auth A], E [auth C], G [auth E] | L-PEPTIDE LINKING | C5 H7 N O3 |  | GLN |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.50 Å
- R-Value Free: 0.272
- R-Value Work: 0.219
- R-Value Observed: 0.222
- Space Group: P 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 61.22 | α = 92.32 |
| b = 82.26 | β = 95.47 |
| c = 89.31 | γ = 89.82 |
| Software Name | Purpose |
|---|---|
| XDS | data reduction |
| XSCALE | data scaling |
| PHASER | phasing |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
Entry History
Deposition Data
- Released Date: 2018-05-02 Deposition Author(s): Skrabana, R., Novak, M., Cehlar, O., Kontsekova, E.
Revision History (Full details and data files)
- Version 1.0: 2018-05-02
Type: Initial release - Version 2.0: 2020-03-11
Changes: Polymer sequence - Version 2.1: 2024-01-17
Changes: Data collection, Database references, Refinement description
