5KOA

Structure of Escherichia coli ZapD bound to the C-terminal tail of FtsZ

PDB DOI: https://doi.org/10.2210/pdb5KOA/pdb

Classification: CELL CYCLE
Organism(s): Escherichia coli S88, Escherichia coli
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2016-06-29 Released: 2017-01-25
Deposition Author(s): Schumacher, M.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.67 Å
R-Value Free: 0.266
R-Value Work: 0.230
R-Value Observed: 0.234

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Structure of Escherichia coli ZapD bound to the C-terminal tail of FtsZ

Schumacher, M.

To be published.

Macromolecule Content

Total Structure Weight: 57.84 kDa
Atom Count: 4,130
Modelled Residue Count: 504
Deposited Residue Count: 504
Unique protein chains: 2

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Cell division protein ZapD	A, B	246	Escherichia coli S88	Mutation(s): 0 Gene Names: zapD, ECS88_0105
UniProt
Find proteins for B7MAM4 (Escherichia coli O45:K1 (strain S88 / ExPEC)) Explore B7MAM4 Go to UniProtKB: B7MAM4
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	B7MAM4
Sequence Annotations Expand
Reference Sequence

Find similar proteins by: Sequence | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
C-terminal tail of FtsZ	C [auth D]	12	Escherichia coli	Mutation(s): 0
UniProt
Find proteins for P0A9A6 (Escherichia coli (strain K12)) Explore P0A9A6 Go to UniProtKB: P0A9A6
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P0A9A6
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.67 Å
R-Value Free: 0.266
R-Value Work: 0.230
R-Value Observed: 0.234
Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 71.322	α = 90
b = 51.912	β = 90.68
c = 79.146	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
MOSFLM	data reduction
SCALA	data scaling
MOLREP	phasing
PDB_EXTRACT	data extraction

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2017-01-25

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2017-01-25
Type: Initial release
Version 1.1: 2023-10-04
Changes: Data collection, Database references, Refinement description

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.