Download MendeleyTrypanosoma brucei bromodomain BDF5 (Tb427tmp.01.5000)
Lin, Y.H., Tempel, W., Walker, J.R., Loppnau, P., Amani, M., Hou, C.F.D., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Weigelt, J., Hui, R.To be published.
5K29
Trypanosoma brucei bromodomain BDF5 (Tb427tmp.01.5000)
- PDB DOI: https://doi.org/10.2210/pdb5K29/pdb
- Classification: Structural Genomics, Unknown Function
- Organism(s): Trypanosoma brucei brucei TREU927
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2016-05-18 Released: 2016-07-13
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.223
- R-Value Work: 0.191
- R-Value Observed: 0.194
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| uncharacterized protein BDF5 | 126 | Trypanosoma brucei brucei TREU927 | Mutation(s): 0 Gene Names: Tb11.01.5000 |  | |
UniProt | |||||
Find proteins for Q382J7 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1)) Explore Q382J7 Go to UniProtKB: Q382J7 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q382J7 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| UNX Query on UNX | C [auth A] D [auth B] E [auth B] F [auth B] G [auth B] | UNKNOWN ATOM OR ION X |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.223
- R-Value Work: 0.191
- R-Value Observed: 0.194
- Space Group: P 1 21 1
- Diffraction Data: https://doi.org/10.18430/M35K29
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 53.358 | α = 90 |
| b = 41.02 | β = 111.39 |
| c = 53.067 | γ = 90 |
| Software Name | Purpose |
|---|---|
| BUSTER-TNT | refinement |
| Aimless | data scaling |
| PDB_EXTRACT | data extraction |
| HKL-2000 | data reduction |
| XDS | data scaling |
| BUCCANEER | model building |
| PHASER | phasing |
| SHELXDE | phasing |
| ARP | model building |
| WARP | model building |
Entry History
Deposition Data
- Released Date: 2016-07-13 Deposition Author(s): Lin, Y.H., Tempel, W., Walker, J.R., Loppnau, P., Amani, M., Hou, C.F.D., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Weigelt, J., Hui, R., Structural Genomics Consortium (SGC)
Revision History (Full details and data files)
- Version 1.0: 2016-07-13
Type: Initial release - Version 1.1: 2016-11-02
Changes: Structure summary
