Download MendeleyCrystal structure of chitinase from Chromobacterium violaceum ATCC 12472
Chang, C., Michalska, K., Tesar, C., Clancy, S., Joachimiak, A.To be published.
5JH8
Crystal structure of chitinase from Chromobacterium violaceum ATCC 12472
- PDB DOI: https://doi.org/10.2210/pdb5JH8/pdb
- Classification: HYDROLASE
- Organism(s): Chromobacterium violaceum ATCC 12472
- Expression System: Escherichia coli 'BL21-Gold(DE3)pLysS AG
- Mutation(s): No
- Deposited: 2016-04-20 Released: 2016-05-25
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.02 Å
- R-Value Free: 0.148
- R-Value Work: 0.131
- R-Value Observed: 0.131
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Probable chitinase | 317 | Chromobacterium violaceum ATCC 12472 | Mutation(s): 0 Gene Names: CV_2736 |  | |
UniProt | |||||
Find proteins for Q7NUG2 (Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757)) Explore Q7NUG2 Go to UniProtKB: Q7NUG2 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q7NUG2 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| 6KY Query on 6KY | E [auth A] | (2S)-2-(dimethylamino)-4-(methylselanyl)butanoic acid C7 H15 N O2 Se HLLONANTKRYYCG-LURJTMIESA-N |  | ||
| HIS Query on HIS | F [auth A] | HISTIDINE C6 H10 N3 O2 HNDVDQJCIGZPNO-YFKPBYRVSA-O |  | ||
| EDO Query on EDO | B [auth A], C [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
| CL Query on CL | D [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
| Modified Residues 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MLY Query on MLY | A | L-PEPTIDE LINKING | C8 H18 N2 O2 |  | LYS |
| MLZ Query on MLZ | A | L-PEPTIDE LINKING | C7 H16 N2 O2 |  | LYS |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.02 Å
- R-Value Free: 0.148
- R-Value Work: 0.131
- R-Value Observed: 0.131
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 41.03 | α = 90 |
| b = 67.034 | β = 90.2 |
| c = 57.301 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| SCALEPACK | data scaling |
| PDB_EXTRACT | data extraction |
| HKL-3000 | data reduction |
| HKL-3000 | phasing |
Entry History
Deposition Data
- Released Date: 2016-05-25 Deposition Author(s): Chang, C., Michalska, K., Tesar, C., Clancy, S., Joachimiak, A.
Revision History (Full details and data files)
- Version 1.0: 2016-05-25
Type: Initial release - Version 1.1: 2016-08-17
Changes: Structure summary - Version 1.2: 2024-04-03
Changes: Data collection, Database references, Derived calculations, Refinement description
