Download MendeleyCrystal structure of Extracellular solute-binding protein family 1
Chang, C., Cuff, M., Chhor, G., Endres, M., Joachimiak, A.To be published.
5IXP
Crystal structure of Extracellular solute-binding protein family 1
- PDB DOI: https://doi.org/10.2210/pdb5IXP/pdb
- Classification: TRANSPORT PROTEIN
- Organism(s): Kribbella flavida DSM 17836
- Expression System: Escherichia coli 'BL21-Gold(DE3)pLysS AG
- Mutation(s): No
- Deposited: 2016-03-23 Released: 2016-03-30
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.73 Å
- R-Value Free: 0.172
- R-Value Work: 0.130
- R-Value Observed: 0.132
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Extracellular solute-binding protein family 1 | 393 | Kribbella flavida DSM 17836 | Mutation(s): 0 Gene Names: Kfla_2403 |  | |
UniProt | |||||
Find proteins for D2PV11 (Kribbella flavida (strain DSM 17836 / JCM 10339 / NBRC 14399)) Explore D2PV11 Go to UniProtKB: D2PV11 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | D2PV11 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| FMT Query on FMT | B [auth A], C [auth A], D [auth A] | FORMIC ACID C H2 O2 BDAGIHXWWSANSR-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.73 Å
- R-Value Free: 0.172
- R-Value Work: 0.130
- R-Value Observed: 0.132
- Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 89.967 | α = 90 |
| b = 115.184 | β = 131.17 |
| c = 59.976 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| SCALEPACK | data scaling |
| PDB_EXTRACT | data extraction |
| HKL-3000 | data reduction |
| HKL-3000 | phasing |
Entry History
Deposition Data
- Released Date: 2016-03-30 Deposition Author(s): Chang, C., Cuff, M., Chhor, G., Endres, M., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2016-03-30
Type: Initial release - Version 1.1: 2016-08-17
Changes: Structure summary
