Download MendeleyCrystal structure of sugar ABC transport system, substrate-binding protein from Bordetella parapertussis 12822
Chang, C., Cuff, M., Joachimiak, G., Clancy, S., Joachimiak, A.To be published.
5IX8
Crystal structure of sugar ABC transport system, substrate-binding protein from Bordetella parapertussis 12822
- PDB DOI: https://doi.org/10.2210/pdb5IX8/pdb
- Classification: TRANSPORT PROTEIN
- Organism(s): Bordetella parapertussis 12822
- Expression System: Escherichia coli 'BL21-Gold(DE3)pLysS AG
- Mutation(s): No
- Deposited: 2016-03-23 Released: 2016-04-06
- Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.60 Å
- R-Value Free: 0.181
- R-Value Work: 0.140
- R-Value Observed: 0.141
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Putative sugar ABC transport system, substrate-binding protein | 321 | Bordetella parapertussis 12822 | Mutation(s): 0 Gene Names: BPP2773 |  | |
UniProt | |||||
Find proteins for Q7W6X1 (Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253)) Explore Q7W6X1 Go to UniProtKB: Q7W6X1 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q7W6X1 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | C [auth A] D [auth A] G [auth A] H [auth B] I [auth B] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| EDO Query on EDO | E [auth A], F [auth A], L [auth B], M [auth B] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.60 Å
- R-Value Free: 0.181
- R-Value Work: 0.140
- R-Value Observed: 0.141
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 59.557 | α = 90 |
| b = 78.719 | β = 104.83 |
| c = 66.89 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| SCALEPACK | data scaling |
| PDB_EXTRACT | data extraction |
| HKL-3000 | data reduction |
| HKL-3000 | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2016-04-06 Deposition Author(s): Chang, C., Cuff, M., Joachimiak, G., Clancy, S., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | GM 115586 |
Revision History (Full details and data files)
- Version 1.0: 2016-04-06
Type: Initial release - Version 1.1: 2016-08-17
Changes: Structure summary - Version 1.2: 2017-09-20
Changes: Author supporting evidence, Derived calculations - Version 1.3: 2019-12-25
Changes: Author supporting evidence
