Download MendeleyStructure of HMM5 Fab with a bound disaccharide
Plum, M., Bantleon, F., Tjerrild, L., Raiber, T., Eckenberger, J., Wolf, S., Miehe, M., Jabs, F., Greunke, K., Seismann, H., Jakob, T., Andersen, G.R., Spillner, E.To be published.
5I8O
HMM5 Fab in complex with disaccharide
- PDB DOI: https://doi.org/10.2210/pdb5I8O/pdb
- Classification: IMMUNE SYSTEM
- Organism(s): Homo sapiens
- Expression System: Spodoptera frugiperda
- Mutation(s): No
- Deposited: 2016-02-19 Released: 2016-03-23
- Funding Organization(s): Novo Nordisk Foundation
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.205
- R-Value Work: 0.164
- R-Value Observed: 0.166
wwPDB Validation 3D Report Full Report
This is version 2.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| HMM5 antibody heavy chain | A [auth H] | 219 | Homo sapiens | Mutation(s): 0 |  |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| HMM5 antibody light chain | B [auth L] | 217 | Homo sapiens | Mutation(s): 0 |  |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Oligosaccharides
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.205
- R-Value Work: 0.164
- R-Value Observed: 0.166
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 63.447 | α = 90 |
| b = 63.587 | β = 90 |
| c = 108.771 | γ = 90 |
| Software Name | Purpose |
|---|---|
| XSCALE | data scaling |
| PHASER | phasing |
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
| XDS | data reduction |
Entry History & Funding Information
Deposition Data
- Released Date: 2016-03-23 Deposition Author(s): Andersen, G.R., Tjerrild, L.M., Spillner, E.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Novo Nordisk Foundation | Denmark | -- |
Revision History (Full details and data files)
- Version 1.0: 2016-03-23
Type: Initial release - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Derived calculations, Structure summary
