5GJX

Crystal structure of DUCK MHC I for 2.06 angstrom

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.06 Å
  • R-Value Free: 0.253 
  • R-Value Work: 0.208 
  • R-Value Observed: 0.210 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history. 


Literature

Structural Definition Of Duck MHC Class I For 2.06 Angstrom Explains its Resistance to Influenza A virus

Wu, Y., Xia, C.

To be published.

Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
MHC class I antigen273Anas platyrhynchosMutation(s): 1 
Gene Names: Du5MHC I
UniProt
Find proteins for Q6I7L2 (Anas platyrhynchos)
Explore Q6I7L2 
Go to UniProtKB:  Q6I7L2
Entity Groups  
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UniProt GroupQ6I7L2
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Beta-2-microglobulin104Anas platyrhynchosMutation(s): 0 
Gene Names: b2m
UniProt
Find proteins for Q14U75 (Anas platyrhynchos)
Explore Q14U75 
Go to UniProtKB:  Q14U75
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UniProt GroupQ14U75
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  • Reference Sequence

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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
ARG-LEU-ILE-GLN-ASN-SER-ILE-THR-ILE9unidentified influenza virusMutation(s): 0 
UniProt
Find proteins for Q9Q0U8 (Influenza A virus (strain A/Goose/Guangdong/1/1996 H5N1 genotype Gs/Gd))
Explore Q9Q0U8 
Go to UniProtKB:  Q9Q0U8
Entity Groups  
UniProt GroupQ9Q0U8
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.06 Å
  • R-Value Free: 0.253 
  • R-Value Work: 0.208 
  • R-Value Observed: 0.210 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 46.487α = 90
b = 63.538β = 106.1
c = 79.954γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-2000data reduction
HKL-2000data scaling
PHASERphasing
REFMACrefinement

Structure Validation

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Entry History & Funding Information

Deposition Data

  • Released Date: 2017-05-10 
    • Deposition Author(s): Wu, Y., Xia, C.
Funding OrganizationLocationGrant Number
National Key Basic Research Program of ChinaChina2013CB835302
National Natural Science Foundation of ChinaChinaNo. 31572493

Revision History  (Full details and data files)

  • Version 1.0: 2017-05-10
    Type: Initial release
  • Version 1.1: 2023-11-08
    Changes: Data collection, Database references, Refinement description