5FO7
Crystal Structure of Human Complement C3b at 2.8 Angstrom resolution
- PDB DOI: https://doi.org/10.2210/pdb5FO7/pdb
- Classification: LIPID BINDING
- Organism(s): Homo sapiens
- Mutation(s): No 
- Deposited: 2015-11-18 Released: 2016-04-06 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.80 Å
- R-Value Free: 0.268 
- R-Value Work: 0.229 
- R-Value Observed: 0.231 
This is version 1.3 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
COMPLEMENT C3 BETA CHAIN | 645 | Homo sapiens | Mutation(s): 0  | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P01024 (Homo sapiens) Explore P01024  Go to UniProtKB:  P01024 | |||||
PHAROS:  P01024 GTEx:  ENSG00000125730  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P01024 | ||||
Sequence AnnotationsExpand | |||||
|
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
COMPLEMENT C3B ALPHA' CHAIN | 915 | Homo sapiens | Mutation(s): 0  | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P01024 (Homo sapiens) Explore P01024  Go to UniProtKB:  P01024 | |||||
PHAROS:  P01024 GTEx:  ENSG00000125730  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P01024 | ||||
Sequence AnnotationsExpand | |||||
|
Small Molecules
Ligands 1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NAG Query on NAG | C [auth A], D [auth B] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.80 Å
- R-Value Free: 0.268 
- R-Value Work: 0.229 
- R-Value Observed: 0.231 
- Space Group: P 1 21 1
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 57.58 | α = 90 |
b = 136.51 | β = 96.05 |
c = 140.93 | γ = 90 |
Software Name | Purpose |
---|---|
PHENIX | refinement |
iMOSFLM | data reduction |
Aimless | data scaling |
PHASER | phasing |
Entry History 
Deposition Data
- Released Date: 2016-04-06  Deposition Author(s): Forneris, F., Wu, J., Xue, X., Gros, P.
Revision History (Full details and data files)
- Version 1.0: 2016-04-06
Type: Initial release - Version 1.1: 2016-06-01
Changes: Database references - Version 1.2: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Data collection, Derived calculations, Other, Structure summary - Version 1.3: 2024-01-10
Changes: Data collection, Database references, Refinement description, Structure summary