Download MendeleyCrystal structure of known function protein from Kribbella flavida DSM 17836
Chang, C., Duke, N., Endres, M., Chhor, G., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)To be published.
5EVH
Crystal structure of known function protein from Kribbella flavida DSM 17836
- PDB DOI: https://doi.org/10.2210/pdb5EVH/pdb
- Classification: UNKNOWN FUNCTION
- Organism(s): Kribbella flavida DSM 17836
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2015-11-19 Released: 2015-12-02
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.85 Å
- R-Value Free: 0.200
- R-Value Work: 0.172
- R-Value Observed: 0.173
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Uncharacterized protein | 127 | Kribbella flavida DSM 17836 | Mutation(s): 0 Gene Names: Kfla_2811 |  | |
UniProt | |||||
Find proteins for D2Q084 (Kribbella flavida (strain DSM 17836 / JCM 10339 / NBRC 14399)) Explore D2Q084 Go to UniProtKB: D2Q084 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | D2Q084 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GOL Query on GOL | B [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.85 Å
- R-Value Free: 0.200
- R-Value Work: 0.172
- R-Value Observed: 0.173
- Space Group: P 41 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 45.908 | α = 90 |
| b = 45.908 | β = 90 |
| c = 140.479 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SCALEPACK | data scaling |
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
| HKL-3000 | data reduction |
| HKL-3000 | phasing |
| SBC-Collect | data collection |
Entry History
Deposition Data
- Released Date: 2015-12-02 Deposition Author(s): Chang, C., Duke, N., Endres, M., Chhor, G., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2015-12-02
Type: Initial release
