5E2Y

Deposited: 2015-10-01 Released: 2015-12-02
Deposition Author(s): Zhu, X., Wilson, I.A.
Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)

Experimental Data Snapshot

wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 2.1 of the entry. See complete history.

Macromolecule Content

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Hemagglutinin	A, C, E	333	Influenza A virus (A/duck/Egypt/10185SS/2010(H5N1))	Mutation(s): 1 Gene Names: HA
UniProt
Find proteins for G8IPF0 (Influenza A virus) Explore G8IPF0 Go to UniProtKB: G8IPF0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	G8IPF0
Sequence Annotations Expand
Reference Sequence

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(by identity cutoff) | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Hemagglutinin	B, D, F	180	Influenza A virus (A/duck/Egypt/10185SS/2010(H5N1))	Mutation(s): 0 Gene Names: HA
UniProt
Find proteins for G8IPF0 (Influenza A virus) Explore G8IPF0 Go to UniProtKB: G8IPF0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	G8IPF0
Sequence Annotations Expand
Reference Sequence

Oligosaccharides

Entity ID: 3
Molecule	Chains	Length	2D Diagram	Glycosylation	3D Interactions
beta-L-fucopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)]2-acetamido-2-deoxy-beta-D-glucopyranose	G, I	3		N-Glycosylation	Interactions Focus chain G Focus chain I Interactions & Density Focus chain G Focus chain I
Glycosylation Resources
GlyTouCan: G46874CY GlyCosmos: G46874CY GlyGen: G46874CY

Entity ID: 4
Molecule	Chains	Length	2D Diagram	Glycosylation	3D Interactions
beta-L-fucopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)][alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose	H	4		N-Glycosylation	Interactions Focus chain H Interactions & Density Focus chain H
Glycosylation Resources
GlyTouCan: G62810GW GlyCosmos: G62810GW

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
NAG Query on NAG Download Ideal Coordinates CCD File SDF format, chain J [auth A] SDF format, chain K [auth C] SDF format, chain L [auth E] MOL2 format, chain J [auth A] MOL2 format, chain K [auth C] MOL2 format, chain L [auth E]	J [auth A], K [auth C], L [auth E]	2-acetamido-2-deoxy-beta-D-glucopyranose C₈ H₁₅ N O₆ OVRNDRQMDRJTHS-FMDGEEDCSA-N		Interactions Focus chain J [auth A] Focus chain K [auth C] Focus chain L [auth E] Interactions & Density Focus chain J [auth A] Focus chain K [auth C] Focus chain L [auth E]

Experimental Data & Validation

Unit Cell:

Software Package:

Entry History & Funding Information

Deposition Author(s):

Zhu, X.

Funding Organization	Location	Grant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)	United States	AI099275

Version 1.0: 2015-12-02
Type: Initial release
Version 1.1: 2015-12-09
Changes: Other
Version 1.2: 2016-01-13
Changes: Structure summary
Version 1.3: 2017-09-27
Changes: Author supporting evidence, Derived calculations
Version 1.4: 2019-12-11
Changes: Author supporting evidence, Data collection
Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Advisory, Atomic model, Data collection, Derived calculations, Structure summary
Version 2.1: 2023-09-27
Changes: Data collection, Database references, Derived calculations, Refinement description, Structure summary