Download MendeleyCrystal Structure of Beta-lactamase Precursor BlaA from Yersinia enterocolitica
Kim, Y., Joachimiak, G., Endres, M., Babnigg, G., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)To be published.
5E2E
Crystal Structure of Beta-lactamase Precursor BlaA from Yersinia enterocolitica
- PDB DOI: https://doi.org/10.2210/pdb5E2E/pdb
- Classification: HYDROLASE
- Organism(s): Yersinia enterocolitica subsp. enterocolitica 8081
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2015-10-01 Released: 2015-10-28
- Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.243
- R-Value Work: 0.197
- R-Value Observed: 0.199
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Beta-lactamase | 269 | Yersinia enterocolitica subsp. enterocolitica 8081 | Mutation(s): 0 Gene Names: blaA, YE2019 EC: 3.5.2.6 |  | |
UniProt | |||||
Find proteins for A1JML9 (Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)) Explore A1JML9 Go to UniProtKB: A1JML9 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A1JML9 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.243
- R-Value Work: 0.197
- R-Value Observed: 0.199
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 42.116 | α = 90 |
| b = 93.513 | β = 90 |
| c = 122.219 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| SBC-Collect | data collection |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2015-10-28 Deposition Author(s): Kim, Y., Joachimiak, G., Endres, M., Babnigg, G., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | -- |
Revision History (Full details and data files)
- Version 1.0: 2015-10-28
Type: Initial release - Version 1.1: 2022-04-13
Changes: Author supporting evidence, Data collection, Database references, Derived calculations
