5BR0
Crystal structure of hemagglutinin of A/Taiwan/2/2013 (H6N1)
- PDB DOI: https://doi.org/10.2210/pdb5BR0/pdb
- Classification: VIRAL PROTEIN
- Organism(s): Influenza A virus
- Expression System: unidentified baculovirus
- Mutation(s): No
- Deposited: 2015-05-29 Released: 2015-08-12
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.39 Å
- R-Value Free: 0.210
- R-Value Work: 0.182
- R-Value Observed: 0.184
This is version 2.0 of the entry. See complete history.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| HEMAGGLUTININ HA1 CHAIN | 326 | Influenza A virus | Mutation(s): 0 Gene Names: HA |  | |
UniProt | |||||
Find proteins for A0A0M3KL64 (Influenza A virus) Explore A0A0M3KL64 Go to UniProtKB: A0A0M3KL64 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A0M3KL64 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| HEMAGGLUTININ HA2 CHAIN | 171 | Influenza A virus | Mutation(s): 0 Gene Names: HA |  | |
UniProt | |||||
Find proteins for A0A0M3KL65 (Influenza A virus) Explore A0A0M3KL65 Go to UniProtKB: A0A0M3KL65 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A0M3KL65 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Oligosaccharides
Entity ID: 3 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
| alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)]2-acetamido-2-deoxy-beta-D-glucopyranose | E, F | 6 |  | N-Glycosylation | |
Glycosylation Resources | |||||
GlyTouCan: G43648DB GlyCosmos: G43648DB GlyGen: G43648DB | |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NAG Query on NAG | G [auth A] H [auth A] I [auth A] J [auth A] K [auth C] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.39 Å
- R-Value Free: 0.210
- R-Value Work: 0.182
- R-Value Observed: 0.184
- Space Group: P 3
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 114.02 | α = 90 |
| b = 114.02 | β = 90 |
| c = 164.44 | γ = 120 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| MOSFLM | data reduction |
| SCALA | data scaling |
| PHENIX | phasing |
Entry History
Deposition Data
- Released Date: 2015-08-12 Deposition Author(s): Ni, F., Kondrashkina, E., Wang, Q.
Revision History (Full details and data files)
- Version 1.0: 2015-08-12
Type: Initial release - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Advisory, Atomic model, Data collection, Derived calculations, Structure summary
