5BQZ

Experimental Data Snapshot

wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 2.1 of the entry. See complete history.

Macromolecule Content

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
HEMAGGLUTININ HA1 CHAIN	A, C, E	323	Influenza A virus (A/chicken/Guangdong/S1311/2010(H6N6))	Mutation(s): 0 Gene Names: HA
UniProt
Find proteins for A0A067YZV9 (Influenza A virus) Explore A0A067YZV9 Go to UniProtKB: A0A067YZV9
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A067YZV9
Sequence Annotations Expand
Reference Sequence

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(by identity cutoff) | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Hemagglutinin	B, D, F	191	Influenza A virus (A/chicken/Guangdong/S1311/2010(H6N6))	Mutation(s): 0 Gene Names: HA
UniProt
Find proteins for A0A067YZV9 (Influenza A virus) Explore A0A067YZV9 Go to UniProtKB: A0A067YZV9
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A067YZV9
Sequence Annotations Expand
Reference Sequence

Oligosaccharides

Entity ID: 3
Molecule	Chains	Length	2D Diagram	Glycosylation	3D Interactions
N-acetyl-alpha-neuraminic acid-(2-6)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-beta-D-galactopyranose	G	4		N/A	Interactions Focus chain G Interactions & Density Focus chain G
Glycosylation Resources
GlyTouCan: G03509EL GlyCosmos: G03509EL GlyGen: G03509EL

Entity ID: 4
Molecule	Chains	Length	2D Diagram	Glycosylation	3D Interactions
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	H, J	2		N-Glycosylation	Interactions Focus chain H Focus chain J Interactions & Density Focus chain H Focus chain J
Glycosylation Resources
GlyTouCan: G42666HT GlyCosmos: G42666HT GlyGen: G42666HT

Entity ID: 5
Molecule	Chains	Length	2D Diagram	Glycosylation	3D Interactions
N-acetyl-alpha-neuraminic acid-(2-6)-beta-D-galactopyranose	I	2		N/A	Interactions Focus chain I Interactions & Density Focus chain I
Glycosylation Resources
GlyTouCan: G63069TR GlyCosmos: G63069TR GlyGen: G63069TR

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
NAG Query on NAG Download Ideal Coordinates CCD File SDF format, chain K [auth A] SDF format, chain L [auth C] SDF format, chain M [auth C] SDF format, chain N [auth E] MOL2 format, chain K [auth A] MOL2 format, chain L [auth C] MOL2 format, chain M [auth C] MOL2 format, chain N [auth E]	K [auth A], L [auth C], M [auth C], N [auth E]	2-acetamido-2-deoxy-beta-D-glucopyranose C₈ H₁₅ N O₆ OVRNDRQMDRJTHS-FMDGEEDCSA-N		Interactions Focus chain K [auth A] Focus chain L [auth C] Focus chain M [auth C] Focus chain N [auth E] Interactions & Density Focus chain K [auth A] Focus chain L [auth C] Focus chain M [auth C] Focus chain N [auth E]

Experimental Data & Validation

Unit Cell:

Software Package:

Entry History

Deposition Author(s):

Ni, F.

Version 1.0: 2015-10-14
Type: Initial release
Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Advisory, Atomic model, Data collection, Derived calculations, Structure summary
Version 2.1: 2023-09-27
Changes: Data collection, Database references, Derived calculations, Refinement description, Structure summary