Download MendeleyStructural studies of granulovirus envelope fibres.
Busby, J.N., Goldie, K.N., Metcalf, P.To be published.
4YE7
N-terminal domain of Orf22, a Cydia pomonella granulovirus envelope protein
- PDB DOI: https://doi.org/10.2210/pdb4YE7/pdb
- Classification: VIRAL PROTEIN
- Organism(s): Cydia pomonella granulosis virus (isolate Mexican)
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2015-02-23 Released: 2016-03-09
- Funding Organization(s): Marsden Fund
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.40 Å
- R-Value Free: 0.207
- R-Value Work: 0.182
- R-Value Observed: 0.183
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| ORF22 similar to XcGV ORF19 | 110 | Cydia pomonella granulosis virus (isolate Mexican) | Mutation(s): 0 Gene Names: orf22 |  | |
UniProt | |||||
Find proteins for P87582 (Cydia pomonella granulosis virus (isolate Mexico/1963)) Explore P87582 Go to UniProtKB: P87582 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P87582 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ACT Query on ACT | C [auth A] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.40 Å
- R-Value Free: 0.207
- R-Value Work: 0.182
- R-Value Observed: 0.183
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 59.565 | α = 90 |
| b = 61.212 | β = 90 |
| c = 75.283 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| Aimless | data scaling |
| SOLVE | phasing |
| RESOLVE | phasing |
| PDB_EXTRACT | data extraction |
| XDS | data reduction |
Entry History & Funding Information
Deposition Data
- Released Date: 2016-03-09 Deposition Author(s): Busby, J.N., Metcalf, P.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Marsden Fund | New Zealand | UOA1221 |
Revision History (Full details and data files)
- Version 1.0: 2016-03-09
Type: Initial release
