4XX4
Renin in complex with (4S)-4-isopropyl-4-methyl-6-oxo-1-(3-(2-oxo-4-phenylpyrrolidin-1-yl)benzyl)tetrahydropyrimidin-2(1H)-iminium
- PDB DOI: https://doi.org/10.2210/pdb4XX4/pdb
- Classification: Hydrolase/Hydrolase Inhibitor
- Organism(s): Homo sapiens
- Expression System: Homo sapiens
- Mutation(s): No 
- Deposited: 2015-01-29 Released: 2015-02-18 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.40 Å
- R-Value Free: 0.229 
- R-Value Work: 0.210 
- R-Value Observed: 0.210 
This is version 1.5 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Renin | 340 | Homo sapiens | Mutation(s): 0  Gene Names: REN EC: 3.4.23.15 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P00797 (Homo sapiens) Explore P00797  Go to UniProtKB:  P00797 | |||||
PHAROS:  P00797 GTEx:  ENSG00000143839  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P00797 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
Ligands 2 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
70Y Query on 70Y | D [auth A], E [auth B] | (2Z,6S)-2-imino-6-methyl-3-{3-[(4R)-2-oxo-4-phenylpyrrolidin-1-yl]benzyl}-6-(propan-2-yl)tetrahydropyrimidin-4(1H)-one C25 H30 N4 O2 VBYHYTJHKFQNCE-CPJSRVTESA-N | |||
NAG Query on NAG | C [auth A] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.40 Å
- R-Value Free: 0.229 
- R-Value Work: 0.210 
- R-Value Observed: 0.210 
- Space Group: P 21 3
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 142.41 | α = 90 |
b = 142.41 | β = 90 |
c = 142.41 | γ = 90 |
Software Name | Purpose |
---|---|
BUSTER-TNT | refinement |
DENZO | data reduction |
SCALEPACK | data scaling |
PDB_EXTRACT | data extraction |
AMoRE | phasing |
BUSTER | refinement |
Entry History 
Deposition Data
- Released Date: 2015-02-18  Deposition Author(s): Orth, P.
Revision History (Full details and data files)
- Version 1.0: 2015-02-18
Type: Initial release - Version 1.1: 2016-03-16
Changes: Data collection - Version 1.2: 2017-11-22
Changes: Derived calculations, Refinement description - Version 1.3: 2018-04-18
Changes: Data collection, Database references - Version 1.4: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Data collection, Derived calculations, Structure summary - Version 1.5: 2023-09-27
Changes: Data collection, Database references, Refinement description, Structure summary