Download MendeleyCrystal structure of the C-terminal anticodon loop binding domain of a valyl-tRNA synthetase from Pseudomonas aeruginosa.
Edwards, T.E., Fox III, D., Manoil, C.To be published.
4XKZ
Crystal structure of the C-terminal anticodon loop binding domain of a valyl-tRNA synthetase from Pseudomonas aeruginosa
- PDB DOI: https://doi.org/10.2210/pdb4XKZ/pdb
- Classification: LIGASE
- Organism(s): Pseudomonas aeruginosa PAO1
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2015-01-12 Released: 2015-02-11
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.95 Å
- R-Value Free: 0.193
- R-Value Work: 0.156
- R-Value Observed: 0.158
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Valine-tRNA ligase | 269 | Pseudomonas aeruginosa PAO1 | Mutation(s): 0 Gene Names: valS, PA3834 EC: 6.1.1.9 |  | |
UniProt | |||||
Find proteins for Q9HXH0 (Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)) Explore Q9HXH0 Go to UniProtKB: Q9HXH0 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9HXH0 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PGE Query on PGE | F [auth A], G [auth A] | TRIETHYLENE GLYCOL C6 H14 O4 ZIBGPFATKBEMQZ-UHFFFAOYSA-N |  | ||
| IOD Query on IOD | B [auth A], C [auth A], D [auth A], E [auth A] | IODIDE ION I XMBWDFGMSWQBCA-UHFFFAOYSA-M |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.95 Å
- R-Value Free: 0.193
- R-Value Work: 0.156
- R-Value Observed: 0.158
- Space Group: P 4 21 2
- Diffraction Data: https://doi.org/10.18430/M34XKZ
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 103.36 | α = 90 |
| b = 103.36 | β = 90 |
| c = 79.14 | γ = 90 |
| Software Name | Purpose |
|---|---|
| XSCALE | data scaling |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| XDS | data scaling |
| BALBES | phasing |
Entry History
Deposition Data
- Released Date: 2015-02-11 Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Revision History (Full details and data files)
- Version 1.0: 2015-02-11
Type: Initial release - Version 1.1: 2017-11-22
Changes: Derived calculations, Refinement description, Source and taxonomy - Version 1.2: 2024-02-28
Changes: Data collection, Database references, Derived calculations
