Download MendeleyE. COLI TRANSCRIPTIONAL REGULATOR RUTR WITH DIHYDROURACIL
Minor, W.To be published.
4XK4
E. coli transcriptional regulator RUTR with dihydrouracil
- PDB DOI: https://doi.org/10.2210/pdb4XK4/pdb
- Classification: Transcription Regulator
- Organism(s): Escherichia coli K-12
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2015-01-09 Released: 2015-05-13
- Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.27 Å
- R-Value Free: 0.225
- R-Value Work: 0.194
- R-Value Observed: 0.196
wwPDB Validation 3D Report Full Report
This is version 1.4 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| HTH-type transcriptional regulator RutR | 212 | Escherichia coli K-12 | Mutation(s): 0 Gene Names: rutR, ycdC, b1013, JW0998 |  | |
UniProt | |||||
Find proteins for P0ACU2 (Escherichia coli (strain K12)) Explore P0ACU2 Go to UniProtKB: P0ACU2 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P0ACU2 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| DUC Query on DUC | E [auth A], F [auth B], G [auth C], H [auth D] | DIHYDROPYRIMIDINE-2,4(1H,3H)-DIONE C4 H6 N2 O2 OIVLITBTBDPEFK-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.27 Å
- R-Value Free: 0.225
- R-Value Work: 0.194
- R-Value Observed: 0.196
- Space Group: P 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 50.892 | α = 88.37 |
| b = 55.672 | β = 88.8 |
| c = 85.242 | γ = 62.37 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| HKL-3000 | data reduction |
| PDB_EXTRACT | data extraction |
| HKL-3000 | data scaling |
| HKL-3000 | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2015-05-13 Deposition Author(s): Shumilin, I.A., Cooper, D.R., Shabalin, I.G., Grabowski, M., Almo, S.C., Minor, W., New York Structural Genomics Research Consortium (NYSGRC)
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | NIH-5U54GM094662 |
Revision History (Full details and data files)
- Version 1.0: 2015-05-13
Type: Initial release - Version 1.1: 2017-09-06
Changes: Author supporting evidence, Database references, Derived calculations, Source and taxonomy - Version 1.2: 2019-12-25
Changes: Author supporting evidence - Version 1.3: 2022-04-13
Changes: Database references, Structure summary - Version 1.4: 2023-09-27
Changes: Data collection, Refinement description
