Download MendeleyStructure of the dsRBD3 of Loquacious reveals features for dimerization and Dicer1-interaction
Jakob, L., Treiber, T., Treiber, N., Stotz, M., Meister, G.To be published.
4X8W
dsRBD3 of Loquacious
- PDB DOI: https://doi.org/10.2210/pdb4X8W/pdb
- Classification: GENE REGULATION
- Organism(s): Drosophila melanogaster
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2014-12-10 Released: 2016-01-13
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.65 Å
- R-Value Free: 0.251
- R-Value Work: 0.206
- R-Value Observed: 0.208
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Loquacious, isoform B | 75 | Drosophila melanogaster | Mutation(s): 0 Gene Names: loqs, CG6866, Dmel_CG6866 |  | |
UniProt | |||||
Find proteins for Q9VJY9 (Drosophila melanogaster) Explore Q9VJY9 Go to UniProtKB: Q9VJY9 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9VJY9 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Loquacious | 48 | Drosophila melanogaster | Mutation(s): 0 Gene Names: Loquacious |  | |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GOL Query on GOL | I [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MLY Query on MLY | A, B, C, D, E A, B, C, D, E, F, G | L-PEPTIDE LINKING | C8 H18 N2 O2 |  | LYS |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.65 Å
- R-Value Free: 0.251
- R-Value Work: 0.206
- R-Value Observed: 0.208
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 66.018 | α = 90 |
| b = 112.97 | β = 90 |
| c = 114.049 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| Coot | model building |
| XDS | data reduction |
| SHARP | phasing |
| XSCALE | data scaling |
Entry History
Deposition Data
- Released Date: 2016-01-13 Deposition Author(s): Jakob, L., Treiber, N., Treiber, T., Stotz, M., Meister, G.
Revision History (Full details and data files)
- Version 1.0: 2016-01-13
Type: Initial release
