4WXL

Crystal structure of a peptide deformylase from Haemophilus influenzae complex with Actinonin


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.33 Å
  • R-Value Free: 0.241 
  • R-Value Work: 0.172 
  • R-Value Observed: 0.175 

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Ligand Structure Quality Assessment 


This is version 1.1 of the entry. See complete history


Literature

Crystal structure of a peptide deformylase from Haemophilus influenzae complex with Actinonin

Kishor, C.Addlagatta, A.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Peptide deformylase
A, B, C, D
169Haemophilus influenzae 86-028NPMutation(s): 0 
Gene Names: defNTHI0725
EC: 3.5.1.88
UniProt
Find proteins for Q4QMV6 (Haemophilus influenzae (strain 86-028NP))
Explore Q4QMV6 
Go to UniProtKB:  Q4QMV6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ4QMV6
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.33 Å
  • R-Value Free: 0.241 
  • R-Value Work: 0.172 
  • R-Value Observed: 0.175 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 41.201α = 90
b = 79.85β = 97.99
c = 98.168γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
HKL-3000data reduction
DENZOdata scaling
MOLREPmodel building

Structure Validation

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Ligand Structure Quality Assessment 


Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2015-11-18
    Type: Initial release
  • Version 1.1: 2024-03-20
    Changes: Data collection, Database references, Derived calculations