Download MendeleyX-ray Crystallographic Elucidation for the Alkaline High-spin State Transition of Iron(III) Cytochrome c' from Alcaligenes xylosoxidans NCIMB 11015
Takashina, A., Unno, M., Kohzuma, T.(2015) Chem Lett 44: 268-270
4WGZ
Crystal Structure of Cytochrome c' from Alcaligenes xylosoxidans NCIMB 11015 at pH 6.0
- PDB DOI: https://doi.org/10.2210/pdb4WGZ/pdb
- Classification: ELECTRON TRANSPORT
- Organism(s): Achromobacter xylosoxidans
- Mutation(s): No
- Deposited: 2014-09-19 Released: 2015-03-18
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.11 Å
- R-Value Free: 0.162
- R-Value Work: 0.141
- R-Value Observed: 0.142
This is version 2.1 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Cytochrome c' | 127 | Achromobacter xylosoxidans | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for P00138 (Alcaligenes xylosoxydans xylosoxydans) Explore P00138 Go to UniProtKB: P00138 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P00138 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| HEC Query on HEC | B [auth A] | HEME C C34 H34 Fe N4 O4 HXQIYSLZKNYNMH-LJNAALQVSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| PCA Query on PCA | A | L-PEPTIDE LINKING | C5 H7 N O3 |  | GLN |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.11 Å
- R-Value Free: 0.162
- R-Value Work: 0.141
- R-Value Observed: 0.142
- Space Group: P 65 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 53.189 | α = 90 |
| b = 53.189 | β = 90 |
| c = 181.026 | γ = 120 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
Entry History
Deposition Data
- Released Date: 2015-03-18 Deposition Author(s): Takashina, A., Unno, M., Kohzuma, T.
Revision History (Full details and data files)
- Version 1.0: 2015-03-18
Type: Initial release - Version 2.0: 2020-01-29
Changes: Data collection, Database references, Derived calculations, Other, Polymer sequence, Source and taxonomy - Version 2.1: 2023-11-08
Changes: Data collection, Database references, Refinement description
