Download MendeleyCrystal structure of Bradyrhizobium japonicum ScoI in the oxidized state
Quade, N., Abicht, H.K., Hennecke, H., Glockshuber, R.To be published.
4WBJ
Crystal structure of Bradyrhizobium japonicum ScoI in the oxidized state
- PDB DOI: https://doi.org/10.2210/pdb4WBJ/pdb
- Classification: CHAPERONE
- Organism(s): Bradyrhizobium diazoefficiens USDA 110
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2014-09-03 Released: 2015-09-23
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.30 Å
- R-Value Free: 0.142
- R-Value Work: 0.104
- R-Value Observed: 0.106
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Blr1131 protein | 164 | Bradyrhizobium diazoefficiens USDA 110 | Mutation(s): 0 Gene Names: blr1131 |  | |
UniProt | |||||
Find proteins for Q89VB6 (Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110)) Explore Q89VB6 Go to UniProtKB: Q89VB6 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q89VB6 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SIN Query on SIN | C [auth A], D [auth B] | SUCCINIC ACID C4 H6 O4 KDYFGRWQOYBRFD-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.30 Å
- R-Value Free: 0.142
- R-Value Work: 0.104
- R-Value Observed: 0.106
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 38.776 | α = 90 |
| b = 82.629 | β = 90.03 |
| c = 45.853 | γ = 90 |
| Software Name | Purpose |
|---|---|
| XDS | data reduction |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| XSCALE | data scaling |
| PHASER | phasing |
| XSCALE | data reduction |
Entry History
Deposition Data
- Released Date: 2015-09-23 Deposition Author(s): Quade, N., Abicht, H.K., Hennecke, H., Glockshuber, R.
Revision History (Full details and data files)
- Version 1.0: 2015-09-23
Type: Initial release - Version 1.1: 2024-01-10
Changes: Data collection, Database references, Refinement description
