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Savchenko, A.To be published.
4W8K
Crystal structure of a putative Cas1 enzyme from Vibrio phage ICP1
- PDB DOI: https://doi.org/10.2210/pdb4W8K/pdb
- Classification: VIRAL PROTEIN
- Organism(s): Vibrio phage ICP1_2005_A
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2014-08-25 Released: 2014-09-17
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.13 Å
- R-Value Free: 0.207
- R-Value Work: 0.174
- R-Value Observed: 0.175
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Cas1 protein | 323 | Vibrio phage ICP1_2005_A | Mutation(s): 0 Gene Names: TUST1-15_00465 |  | |
UniProt | |||||
Find proteins for F1D4K1 (Vibrio phage ICP1_2005_A) Explore F1D4K1 Go to UniProtKB: F1D4K1 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | F1D4K1 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| K Query on K | C [auth B] | POTASSIUM ION K NPYPAHLBTDXSSS-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.13 Å
- R-Value Free: 0.207
- R-Value Work: 0.174
- R-Value Observed: 0.175
- Space Group: P 21 21 21
- Diffraction Data: https://doi.org/10.18430/M34W8K
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 70.59 | α = 90 |
| b = 83.32 | β = 90 |
| c = 133.98 | γ = 90 |
| Software Name | Purpose |
|---|---|
| XDS | data reduction |
| Aimless | data scaling |
| MrBUMP | phasing |
| PHENIX | model building |
| PHENIX | refinement |
Entry History
Deposition Data
- Released Date: 2014-09-17 Deposition Author(s): Stogios, P.J., Wawrzak, Z., Onopriyeno, O., Yim, V., Savchenko, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)
Revision History (Full details and data files)
- Version 1.0: 2014-09-17
Type: Initial release - Version 1.1: 2017-09-27
Changes: Data collection, Derived calculations, Other, Refinement description, Source and taxonomy - Version 1.2: 2023-09-27
Changes: Data collection, Database references, Refinement description
