4UD8
AtBBE15
- PDB DOI: https://doi.org/10.2210/pdb4UD8/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Arabidopsis thaliana
- Expression System: Komagataella pastoris
- Mutation(s): No 
- Deposited: 2014-12-09 Released: 2015-06-10 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.09 Å
- R-Value Free: 0.221 
- R-Value Work: 0.183 
- R-Value Observed: 0.185 
This is version 2.1 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
FAD-BINDING AND BBE DOMAIN-CONTAINING PROTEIN | 532 | Arabidopsis thaliana | Mutation(s): 0  | ||
UniProt | |||||
Find proteins for O64743 (Arabidopsis thaliana) Explore O64743  Go to UniProtKB:  O64743 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | O64743 | ||||
Sequence AnnotationsExpand | |||||
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Oligosaccharides
Small Molecules
Ligands 5 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
FAD Query on FAD | E [auth A], I [auth B] | FLAVIN-ADENINE DINUCLEOTIDE C27 H33 N9 O15 P2 VWWQXMAJTJZDQX-UYBVJOGSSA-N | |||
PE5 Query on PE5 | G [auth A], K [auth B] | 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL C18 H38 O9 CUDPPTPIUWYGFI-UHFFFAOYSA-N | |||
NAG Query on NAG | F [auth A], J [auth B] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N | |||
K Query on K | L [auth B] | POTASSIUM ION K NPYPAHLBTDXSSS-UHFFFAOYSA-N | |||
NA Query on NA | H [auth A], M [auth B], N [auth B] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.09 Å
- R-Value Free: 0.221 
- R-Value Work: 0.183 
- R-Value Observed: 0.185 
- Space Group: P 21 21 21
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 63.596 | α = 90 |
b = 94.742 | β = 90 |
c = 188.298 | γ = 90 |
Software Name | Purpose |
---|---|
PHENIX | refinement |
XDS | data reduction |
XDS | data scaling |
PHASER | phasing |
Entry History 
Deposition Data
- Released Date: 2015-06-10  Deposition Author(s): Daniel, B., Steiner, B., Pavkov-Keller, T., Dordic, A., Gutmann, A., Sensen, C.W., Nidetzky, B., van der Graaff, E., Wallner, S., Gruber, K., Macheroux, P.
Revision History (Full details and data files)
- Version 1.0: 2015-06-10
Type: Initial release - Version 1.1: 2015-08-12
Changes: Database references - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Derived calculations, Other, Structure summary - Version 2.1: 2023-12-20
Changes: Data collection, Database references, Refinement description, Structure summary